(14 nodes) Regulation of lysosomal lumen pH network (Oryzias latipes)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ppt1	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile). (304 aa)
	LOC101168633	Uncharacterized protein. (290 aa)
	tmem165	GDT1 family protein. (306 aa)
	LOC101162601	Uncharacterized protein. (1124 aa)
	cln6	CLN6 transmembrane ER protein a. (310 aa)
	snapin	SNAP associated protein. (133 aa)
	tmem199	Transmembrane protein 199. (209 aa)
	lrrk2	Leucine-rich repeat kinase 2. (2241 aa)
	cln3	Battenin. (437 aa)
	tmem175	Transmembrane protein 175. (493 aa)
	grn	Granulin b. (766 aa)
	vps33a	VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family. (600 aa)
	CXorf21	Chromosome X open reading frame 21. (328 aa)
	atp6ap2	ATPase H+ transporting accessory protein 2. (374 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cln3	cln6	ENSORLP00000021527	ENSORLP00000041918	Battenin.	CLN6 transmembrane ER protein a.	0.800
cln3	ppt1	ENSORLP00000021527	ENSORLP00000012138	Battenin.	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).	0.818
cln6	cln3	ENSORLP00000041918	ENSORLP00000021527	CLN6 transmembrane ER protein a.	Battenin.	0.800
cln6	ppt1	ENSORLP00000041918	ENSORLP00000012138	CLN6 transmembrane ER protein a.	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).	0.788
ppt1	cln3	ENSORLP00000012138	ENSORLP00000021527	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).	Battenin.	0.818
ppt1	cln6	ENSORLP00000012138	ENSORLP00000041918	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).	CLN6 transmembrane ER protein a.	0.788