19 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101155470	Uncharacterized protein. (210 aa)
	ccbe1	Collagen and calcium binding EGF domains 1. (397 aa)
	LOC101166150	Heat shock protein, alpha-crystallin-related, b15; Belongs to the small heat shock protein (HSP20) family. (198 aa)
	flt1	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1282 aa)
	LOC101160152	Uncharacterized protein. (249 aa)
	itgb1bp1	Integrin beta 1 binding protein 1. (198 aa)
	MAPKAPK2	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily. (389 aa)
	xbp1	X-box binding protein 1. (259 aa)
	vegfa	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family. (214 aa)
	ENSORLP00000031838	Uncharacterized protein. (112 aa)
	LOC101161449	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (135 aa)
	vegfb	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (237 aa)
	gas1	Growth arrest-specific 1a. (257 aa)
	LOC101157091	PH domain-containing protein. (761 aa)
	gab1	GRB2-associated binding protein 1. (795 aa)
	LOC101171145	Sprouty RTK signaling antagonist 2. (342 aa)
	H2LCR5_ORYLA	Growth arrest-specific 1b. (236 aa)
	vegfc	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (494 aa)
	nrp1	Neuropilin; Belongs to the neuropilin family. (938 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2LCR5_ORYLA	LOC101160152	ENSORLP00000003705	ENSORLP00000017977	Growth arrest-specific 1b.	Uncharacterized protein.	0.905
H2LCR5_ORYLA	gas1	ENSORLP00000003705	ENSORLP00000038305	Growth arrest-specific 1b.	Growth arrest-specific 1a.	0.902
LOC101157091	gab1	ENSORLP00000040455	ENSORLP00000041732	PH domain-containing protein.	GRB2-associated binding protein 1.	0.900
LOC101160152	H2LCR5_ORYLA	ENSORLP00000017977	ENSORLP00000003705	Uncharacterized protein.	Growth arrest-specific 1b.	0.905
LOC101160152	gas1	ENSORLP00000017977	ENSORLP00000038305	Uncharacterized protein.	Growth arrest-specific 1a.	0.905
LOC101161449	flt1	ENSORLP00000034039	ENSORLP00000010960	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.920
LOC101161449	nrp1	ENSORLP00000034039	ENSORLP00000042087	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Neuropilin; Belongs to the neuropilin family.	0.694
LOC101161449	vegfa	ENSORLP00000034039	ENSORLP00000030284	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family.	0.434
LOC101161449	vegfb	ENSORLP00000034039	ENSORLP00000037621	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.725
LOC101161449	vegfc	ENSORLP00000034039	ENSORLP00000002709	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.455
LOC101166150	MAPKAPK2	ENSORLP00000010251	ENSORLP00000019719	Heat shock protein, alpha-crystallin-related, b15; Belongs to the small heat shock protein (HSP20) family.	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily.	0.997
MAPKAPK2	LOC101166150	ENSORLP00000019719	ENSORLP00000010251	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily.	Heat shock protein, alpha-crystallin-related, b15; Belongs to the small heat shock protein (HSP20) family.	0.997
MAPKAPK2	flt1	ENSORLP00000019719	ENSORLP00000010960	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.428
ccbe1	vegfc	ENSORLP00000007646	ENSORLP00000002709	Collagen and calcium binding EGF domains 1.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.751
flt1	LOC101161449	ENSORLP00000010960	ENSORLP00000034039	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.920
flt1	MAPKAPK2	ENSORLP00000010960	ENSORLP00000019719	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily.	0.428
flt1	nrp1	ENSORLP00000010960	ENSORLP00000042087	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Neuropilin; Belongs to the neuropilin family.	0.766
flt1	vegfa	ENSORLP00000010960	ENSORLP00000030284	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family.	0.843
flt1	vegfb	ENSORLP00000010960	ENSORLP00000037621	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.917
flt1	vegfc	ENSORLP00000010960	ENSORLP00000002709	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.978