(73 nodes) Retrograde transport, endosome to Golgi network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vps54	VPS54 subunit of GARP complex. (986 aa)
	RAB41	Uncharacterized protein. (211 aa)
	LOC101166919	Dynactin 1b. (1259 aa)
	RAB29	RAB29, member RAS oncogene family. (204 aa)
	tbc1d5	TBC1 domain family, member 5. (863 aa)
	arl1	ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family. (233 aa)
	SLC66A2	Solute carrier family 66 member 2. (271 aa)
	vti1a	Vesicle transport through interaction with t-SNAREs 1A. (224 aa)
	vti1b	Vesicle transport through interaction with t-SNAREs 1B. (227 aa)
	UBE2O	Ubiquitin conjugating enzyme E2 O. (1361 aa)
	snx2	Sorting nexin 2. (513 aa)
	stx16	Syntaxin 16; Belongs to the syntaxin family. (302 aa)
	LOC101156359	RAB6B, member RAS oncogene family. (208 aa)
	rab6a	RAB6A, member RAS oncogene family. (208 aa)
	LOC101175396	Si:dkey-246g23.2. (244 aa)
	Vamp3	Vesicle-associated membrane protein 3 (cellubrevin). (99 aa)
	tbc1d23	TBC1 domain family, member 23. (694 aa)
	RAB9A	RAB9A, member RAS oncogene family. (201 aa)
	vps29	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. (182 aa)
	LOC101156293	Uncharacterized protein. (550 aa)
	pikfyve	Phosphoinositide kinase, FYVE finger containing. (2070 aa)
	stx10	Syntaxin 10. (247 aa)
	BET1L	Bet1 golgi vesicular membrane trafficking protein like. (106 aa)
	tbc1d10a	TBC1 domain family, member 10Ab. (474 aa)
	golt1a	Golgi transport 1A. (215 aa)
	LOC101172966	Syntaxin 6; Belongs to the syntaxin family. (249 aa)
	vps52	VPS52 subunit of GARP complex. (724 aa)
	Snx1	Sorting nexin 1b. (305 aa)
	snx12	Sorting nexin 12. (162 aa)
	LOC101163736	Sorting nexin 1a. (668 aa)
	LOC101168291	Zgc:153733. (261 aa)
	stx5	Syntaxin 5A; Belongs to the syntaxin family. (329 aa)
	cltcl1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1658 aa)
	LOC101162835	Golgi transport 1Bb. (138 aa)
	prepl	Prolyl endopeptidase like. (718 aa)
	snx8	Sorting nexin 8a. (521 aa)
	vps26b	VPS26, retromer complex component B. (333 aa)
	LOC101169568	PH domain-containing protein. (374 aa)
	H2LPR1_ORYLA	RAB9B, member RAS oncogene family. (210 aa)
	H2LQH7_ORYLA	RAB9A, member RAS oncogene family. (210 aa)
	RIC1	RIC1 homolog, RAB6A GEF complex partner 1. (1398 aa)
	washc2c	CAP-ZIP_m domain-containing protein. (1389 aa)
	rgp1	GP1 homolog, RAB6A GEF complex partner 1. (386 aa)
	vps53	VPS53 subunit of GARP complex. (789 aa)
	rhobtb3	Si:dkey-6b12.5. (619 aa)
	washc1	WAS protein family homolog 1. (364 aa)
	vps26a	VPS26, retromer complex component A. (328 aa)
	snx6	Sorting nexin; Involved in several stages of intracellular trafficking. (407 aa)
	arfrp1	ADP-ribosylation factor related protein 1. (201 aa)
	rbsn	Rabenosyn, RAB effector. (777 aa)
	TMEM87B	Transmembrane protein 87B. (570 aa)
	Cln5	CLN5 intracellular trafficking protein. (293 aa)
	ankfy1	Ankyrin repeat and FYVE domain containing 1. (1166 aa)
	snx5	Sorting nexin 5. (375 aa)
	heatr5b	HEAT repeat containing 5B. (2112 aa)
	golt1b	Golgi transport 1Ba. (128 aa)
	LOC101157554	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1677 aa)
	gbf1	Golgi brefeldin A resistant guanine nucleotide exchange factor 1. (1871 aa)
	snx3	Sorting nexin 3. (162 aa)
	LOC101168453	Si:dkey-28n18.9. (368 aa)
	plekhj1	Pleckstrin homology domain containing, family J member 1. (158 aa)
	LOC101164752	Ring finger protein 126. (356 aa)
	GCC2	GRIP domain-containing protein. (1663 aa)
	vps51	VPS51 subunit of GARP complex. (844 aa)
	LOC101162870	Dynactin 1a. (1440 aa)
	trappc10	Trafficking protein particle complex 10. (1264 aa)
	clcf1	Cardiotrophin-like cytokine factor 1. (492 aa)
	cltc	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1695 aa)
	rab6b	Uncharacterized protein. (382 aa)
	LOC101164901	Rab-GAP TBC domain-containing protein. (1092 aa)
	tbc1d10b	TBC1 domain family, member 10b. (871 aa)
	LOC101158204	TBC1 domain family, member 10Aa. (510 aa)
	LOC101165082	Zgc:162698. (629 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BET1L	LOC101172966	ENSORLP00000026607	ENSORLP00000000116	Bet1 golgi vesicular membrane trafficking protein like.	Syntaxin 6; Belongs to the syntaxin family.	0.734
BET1L	Vamp3	ENSORLP00000026607	ENSORLP00000019936	Bet1 golgi vesicular membrane trafficking protein like.	Vesicle-associated membrane protein 3 (cellubrevin).	0.789
BET1L	gbf1	ENSORLP00000026607	ENSORLP00000029765	Bet1 golgi vesicular membrane trafficking protein like.	Golgi brefeldin A resistant guanine nucleotide exchange factor 1.	0.631
BET1L	stx10	ENSORLP00000026607	ENSORLP00000024914	Bet1 golgi vesicular membrane trafficking protein like.	Syntaxin 10.	0.734
BET1L	stx16	ENSORLP00000026607	ENSORLP00000044487	Bet1 golgi vesicular membrane trafficking protein like.	Syntaxin 16; Belongs to the syntaxin family.	0.771
BET1L	stx5	ENSORLP00000026607	ENSORLP00000002800	Bet1 golgi vesicular membrane trafficking protein like.	Syntaxin 5A; Belongs to the syntaxin family.	0.999
BET1L	vti1a	ENSORLP00000026607	ENSORLP00000041478	Bet1 golgi vesicular membrane trafficking protein like.	Vesicle transport through interaction with t-SNAREs 1A.	0.781
BET1L	vti1b	ENSORLP00000026607	ENSORLP00000041985	Bet1 golgi vesicular membrane trafficking protein like.	Vesicle transport through interaction with t-SNAREs 1B.	0.781
GCC2	H2LPR1_ORYLA	ENSORLP00000019473	ENSORLP00000008046	GRIP domain-containing protein.	RAB9B, member RAS oncogene family.	0.949
GCC2	H2LQH7_ORYLA	ENSORLP00000019473	ENSORLP00000008319	GRIP domain-containing protein.	RAB9A, member RAS oncogene family.	0.949
GCC2	LOC101156359	ENSORLP00000019473	ENSORLP00000044668	GRIP domain-containing protein.	RAB6B, member RAS oncogene family.	0.794
GCC2	LOC101172966	ENSORLP00000019473	ENSORLP00000000116	GRIP domain-containing protein.	Syntaxin 6; Belongs to the syntaxin family.	0.597
GCC2	RAB41	ENSORLP00000019473	ENSORLP00000036989	GRIP domain-containing protein.	Uncharacterized protein.	0.794
GCC2	RAB9A	ENSORLP00000019473	ENSORLP00000022283	GRIP domain-containing protein.	RAB9A, member RAS oncogene family.	0.949
GCC2	RIC1	ENSORLP00000019473	ENSORLP00000009365	GRIP domain-containing protein.	RIC1 homolog, RAB6A GEF complex partner 1.	0.590
GCC2	Vamp3	ENSORLP00000019473	ENSORLP00000019936	GRIP domain-containing protein.	Vesicle-associated membrane protein 3 (cellubrevin).	0.577
GCC2	arfrp1	ENSORLP00000019473	ENSORLP00000013349	GRIP domain-containing protein.	ADP-ribosylation factor related protein 1.	0.603
GCC2	arl1	ENSORLP00000019473	ENSORLP00000041059	GRIP domain-containing protein.	ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.	0.708
GCC2	rab6a	ENSORLP00000019473	ENSORLP00000044902	GRIP domain-containing protein.	RAB6A, member RAS oncogene family.	0.794
GCC2	rab6b	ENSORLP00000019473	ENSORLP00000034791	GRIP domain-containing protein.	Uncharacterized protein.	0.794