(30 nodes) Receptor clustering network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2LIM0_ORYLA	Uncharacterized protein. (726 aa)
	LOC101171843	Uncharacterized protein. (469 aa)
	wdr19	WD repeat domain 19. (1347 aa)
	LOC101159214	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family. (800 aa)
	colq	Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase. (454 aa)
	sav1	Salvador family WW domain containing protein 1. (391 aa)
	ptn	Pleiotrophin. (165 aa)
	LOC101166399	Apolipoprotein Ea. (262 aa)
	gphn	Gephyrin b. (794 aa)
	LOC101156053	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released. (779 aa)
	LOC101159448	Shisa family member 7. (668 aa)
	LOC101171070	Uncharacterized protein; Belongs to the MAGUK family. (1280 aa)
	LOC101173221	Membrane associated guanylate kinase, WW and PDZ domain containing 2b. (1528 aa)
	ENSORLP00000034659	Reelin domain-containing protein. (259 aa)
	LOC101168565	Discs, large homolog 2 (Drosophila); Belongs to the MAGUK family. (843 aa)
	ssna1	Sjogren syndrome nuclear autoantigen 1. (114 aa)
	LOC101156681	Discs, large (Drosophila) homolog 1, like; Belongs to the MAGUK family. (1001 aa)
	ENSORLP00000029099	Uncharacterized protein. (282 aa)
	GLRB	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (518 aa)
	cdk5	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	magi2	Membrane associated guanylate kinase, WW and PDZ domain containing 2a. (1331 aa)
	itgb1bp1	Integrin beta 1 binding protein 1. (198 aa)
	LOC101154926	Glycine receptor, beta a; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (498 aa)
	LOC101161673	Apolipoprotein Eb. (265 aa)
	H2MA54_ORYLA	Uncharacterized protein. (489 aa)
	lrrc1	Leucine rich repeat containing 1. (497 aa)
	fnta	Farnesyltransferase, CAAX box, alpha. (387 aa)
	agrn	Agrin. (1950 aa)
	SHISA6	Shisa family member 6. (624 aa)
	dlg3	Discs, large homolog 3 (Drosophila); Belongs to the MAGUK family. (865 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000029099	ENSORLP00000034659	ENSORLP00000029099	ENSORLP00000034659	Uncharacterized protein.	Reelin domain-containing protein.	0.944
ENSORLP00000034659	ENSORLP00000029099	ENSORLP00000034659	ENSORLP00000029099	Reelin domain-containing protein.	Uncharacterized protein.	0.944
ENSORLP00000034659	H2LIM0_ORYLA	ENSORLP00000034659	ENSORLP00000005849	Reelin domain-containing protein.	Uncharacterized protein.	0.944
GLRB	LOC101156053	ENSORLP00000025233	ENSORLP00000041942	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.795
GLRB	gphn	ENSORLP00000025233	ENSORLP00000043506	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Gephyrin b.	0.795
H2LIM0_ORYLA	ENSORLP00000034659	ENSORLP00000005849	ENSORLP00000034659	Uncharacterized protein.	Reelin domain-containing protein.	0.944
H2MA54_ORYLA	LOC101156681	ENSORLP00000015402	ENSORLP00000029699	Uncharacterized protein.	Discs, large (Drosophila) homolog 1, like; Belongs to the MAGUK family.	0.462
H2MA54_ORYLA	LOC101159214	ENSORLP00000015402	ENSORLP00000008601	Uncharacterized protein.	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	0.473
H2MA54_ORYLA	LOC101168565	ENSORLP00000015402	ENSORLP00000034112	Uncharacterized protein.	Discs, large homolog 2 (Drosophila); Belongs to the MAGUK family.	0.462
H2MA54_ORYLA	LOC101171070	ENSORLP00000015402	ENSORLP00000040409	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.462
H2MA54_ORYLA	dlg3	ENSORLP00000015402	ENSORLP00000002385	Uncharacterized protein.	Discs, large homolog 3 (Drosophila); Belongs to the MAGUK family.	0.462
LOC101154926	LOC101156053	ENSORLP00000018600	ENSORLP00000041942	Glycine receptor, beta a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.795
LOC101154926	gphn	ENSORLP00000018600	ENSORLP00000043506	Glycine receptor, beta a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Gephyrin b.	0.795
LOC101156053	GLRB	ENSORLP00000041942	ENSORLP00000025233	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.795
LOC101156053	LOC101154926	ENSORLP00000041942	ENSORLP00000018600	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Glycine receptor, beta a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.795
LOC101156053	gphn	ENSORLP00000041942	ENSORLP00000043506	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Gephyrin b.	0.901
LOC101156681	H2MA54_ORYLA	ENSORLP00000029699	ENSORLP00000015402	Discs, large (Drosophila) homolog 1, like; Belongs to the MAGUK family.	Uncharacterized protein.	0.462
LOC101156681	lrrc1	ENSORLP00000029699	ENSORLP00000012353	Discs, large (Drosophila) homolog 1, like; Belongs to the MAGUK family.	Leucine rich repeat containing 1.	0.462
LOC101159214	H2MA54_ORYLA	ENSORLP00000008601	ENSORLP00000015402	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	Uncharacterized protein.	0.473
LOC101159214	dlg3	ENSORLP00000008601	ENSORLP00000002385	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	Discs, large homolog 3 (Drosophila); Belongs to the MAGUK family.	0.655