(10 nodes) 3-5 DNA helicase activity network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fancm	Uncharacterized protein. (1993 aa)
	helq	Helicase, POLQ like. (985 aa)
	recql	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (802 aa)
	fbh1	F-box DNA helicase 1. (1070 aa)
	ENSORLP00000032044	Reverse transcriptase domain-containing protein. (488 aa)
	blm	Uncharacterized protein. (1393 aa)
	recql5	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (989 aa)
	dhx9	DEAH (Asp-Glu-Ala-His) box helicase 9. (1283 aa)
	ercc3	Excision repair cross-complementation group 3. (783 aa)
	ascc3	Activating signal cointegrator 1 complex subunit 3. (2059 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000032044	fancm	ENSORLP00000032044	ENSORLP00000018174	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.997
ENSORLP00000032044	fbh1	ENSORLP00000032044	ENSORLP00000040243	Reverse transcriptase domain-containing protein.	F-box DNA helicase 1.	0.860
ascc3	dhx9	ENSORLP00000005287	ENSORLP00000009349	Activating signal cointegrator 1 complex subunit 3.	DEAH (Asp-Glu-Ala-His) box helicase 9.	0.418
ascc3	fancm	ENSORLP00000005287	ENSORLP00000018174	Activating signal cointegrator 1 complex subunit 3.	Uncharacterized protein.	0.578
blm	fancm	ENSORLP00000027048	ENSORLP00000018174	Uncharacterized protein.	Uncharacterized protein.	0.999
blm	fbh1	ENSORLP00000027048	ENSORLP00000040243	Uncharacterized protein.	F-box DNA helicase 1.	0.860
blm	helq	ENSORLP00000027048	ENSORLP00000045595	Uncharacterized protein.	Helicase, POLQ like.	0.488
blm	recql5	ENSORLP00000027048	ENSORLP00000015387	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.403
dhx9	ascc3	ENSORLP00000009349	ENSORLP00000005287	DEAH (Asp-Glu-Ala-His) box helicase 9.	Activating signal cointegrator 1 complex subunit 3.	0.418
ercc3	fancm	ENSORLP00000005510	ENSORLP00000018174	Excision repair cross-complementation group 3.	Uncharacterized protein.	0.900
ercc3	fbh1	ENSORLP00000005510	ENSORLP00000040243	Excision repair cross-complementation group 3.	F-box DNA helicase 1.	0.612
fancm	ENSORLP00000032044	ENSORLP00000018174	ENSORLP00000032044	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.997
fancm	ascc3	ENSORLP00000018174	ENSORLP00000005287	Uncharacterized protein.	Activating signal cointegrator 1 complex subunit 3.	0.578
fancm	blm	ENSORLP00000018174	ENSORLP00000027048	Uncharacterized protein.	Uncharacterized protein.	0.999
fancm	ercc3	ENSORLP00000018174	ENSORLP00000005510	Uncharacterized protein.	Excision repair cross-complementation group 3.	0.900
fancm	fbh1	ENSORLP00000018174	ENSORLP00000040243	Uncharacterized protein.	F-box DNA helicase 1.	0.996
fancm	helq	ENSORLP00000018174	ENSORLP00000045595	Uncharacterized protein.	Helicase, POLQ like.	0.816
fancm	recql	ENSORLP00000018174	ENSORLP00000041438	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.400
fancm	recql5	ENSORLP00000018174	ENSORLP00000015387	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.997
fbh1	ENSORLP00000032044	ENSORLP00000040243	ENSORLP00000032044	F-box DNA helicase 1.	Reverse transcriptase domain-containing protein.	0.860