56 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101170163	Tubulin polymerization-promoting protein family member 3. (178 aa)
	ptn	Pleiotrophin. (165 aa)
	ENSORLP00000044973	Uncharacterized protein. (361 aa)
	ENSORLP00000043804	Uncharacterized protein. (395 aa)
	med1	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1782 aa)
	ash1l	Uncharacterized protein. (1977 aa)
	acod1	Aconitate decarboxylase 1. (478 aa)
	itgb4	Integrin beta. (1912 aa)
	LOC105357487	Activin_recp domain-containing protein. (762 aa)
	serpine2	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2; Belongs to the serpin family. (494 aa)
	LOC101164062	JunB proto-oncogene, AP-1 transcription factor subunit b. (327 aa)
	LOC101155067	Insulin-like growth factor binding protein 5a. (266 aa)
	LOC101169963	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (258 aa)
	ddo	Zgc:172341. (338 aa)
	TCF24	BHLH domain-containing protein. (173 aa)
	ENSORLP00000037244	C-type lectin domain-containing protein. (373 aa)
	ucn	Urotensin 1. (132 aa)
	LOC101167683	Tubulin polymerization-promoting protein family member 2. (178 aa)
	LOC101156798	Storkhead box 2a. (1068 aa)
	LOC101161449	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (135 aa)
	hpgd	15-hydroxyprostaglandin dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (261 aa)
	fosl1	FOS-like antigen 1a. (340 aa)
	ppard	Uncharacterized protein. (517 aa)
	LOC101161906	Transmembrane p24 trafficking protein 2. (207 aa)
	pam	Peptidylglycine alpha-amidating monooxygenase. (1013 aa)
	ENSORLP00000025959	PR domain containing 1b, with ZNF domain. (606 aa)
	LOC101168773	Stork_head domain-containing protein. (964 aa)
	prl	Prolactin 2. (227 aa)
	LOC101167158	Growth hormone secretagogue receptor b; Belongs to the G-protein coupled receptor 1 family. (430 aa)
	tekt3	Tektin 3. (486 aa)
	LOC100125474	Hydroxysteroid (11-beta) dehydrogenase 2; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (407 aa)
	LOC101161417	Ash1 (absent, small, or homeotic)-like (Drosophila). (2905 aa)
	polr1b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1135 aa)
	corin	Corin, serine peptidase. (721 aa)
	crhbp	Corticotropin releasing hormone binding protein. (319 aa)
	LOC101157923	Insulin-like growth factor binding protein 5a. (253 aa)
	bmpr2	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (1056 aa)
	LOC101156980	Uncharacterized protein. (356 aa)
	H2LLS9_ORYLA	Si:dkey-23i12.7. (111 aa)
	LOC101163093	Immunoresponsive gene 1, like. (498 aa)
	LOC101166988	CRF domain-containing protein. (143 aa)
	prdm14	PR domain containing 14. (585 aa)
	ar-alpha	Uncharacterized protein. (687 aa)
	dazap1	DAZ associated protein 1. (435 aa)
	crh	Corticotropin-releasing hormone. (163 aa)
	ptgs2	EGF-like domain-containing protein. (607 aa)
	LOC100049233	Androgen receptor beta subtype. (744 aa)
	pla2g6	Phospholipase A2, group VI (cytosolic, calcium-independent). (820 aa)
	SP3	Sp3a transcription factor. (668 aa)
	LOC101163579	Erythropoietin receptor. (526 aa)
	prdm1	Prdm1a. (845 aa)
	LOC101169770	JunB proto-oncogene, AP-1 transcription factor subunit a. (336 aa)
	prdx3	Peroxiredoxin 3. (249 aa)
	LOC101157986	Sp3b transcription factor. (614 aa)
	a1cf	Apobec1 complementation factor. (595 aa)
	prdm1b	Prdm1b. (775 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2LLS9_ORYLA	LOC101164062	ENSORLP00000006994	ENSORLP00000041897	Si:dkey-23i12.7.	JunB proto-oncogene, AP-1 transcription factor subunit b.	0.696
H2LLS9_ORYLA	LOC101169770	ENSORLP00000006994	ENSORLP00000018212	Si:dkey-23i12.7.	JunB proto-oncogene, AP-1 transcription factor subunit a.	0.696
LOC100049233	ar-alpha	ENSORLP00000011941	ENSORLP00000010323	Androgen receptor beta subtype.	Uncharacterized protein.	0.908
LOC100049233	med1	ENSORLP00000011941	ENSORLP00000043584	Androgen receptor beta subtype.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.576
LOC100125474	LOC101169963	ENSORLP00000000394	ENSORLP00000038112	Hydroxysteroid (11-beta) dehydrogenase 2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.567
LOC100125474	hpgd	ENSORLP00000000394	ENSORLP00000031434	Hydroxysteroid (11-beta) dehydrogenase 2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	15-hydroxyprostaglandin dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.555
LOC101156980	LOC101166988	ENSORLP00000004023	ENSORLP00000008562	Uncharacterized protein.	CRF domain-containing protein.	0.834
LOC101156980	crh	ENSORLP00000004023	ENSORLP00000010676	Uncharacterized protein.	Corticotropin-releasing hormone.	0.834
LOC101156980	ucn	ENSORLP00000004023	ENSORLP00000036699	Uncharacterized protein.	Urotensin 1.	0.748
LOC101161906	bmpr2	ENSORLP00000027768	ENSORLP00000003793	Transmembrane p24 trafficking protein 2.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.682
LOC101163093	acod1	ENSORLP00000007735	ENSORLP00000043171	Immunoresponsive gene 1, like.	Aconitate decarboxylase 1.	0.902
LOC101164062	H2LLS9_ORYLA	ENSORLP00000041897	ENSORLP00000006994	JunB proto-oncogene, AP-1 transcription factor subunit b.	Si:dkey-23i12.7.	0.696
LOC101164062	fosl1	ENSORLP00000041897	ENSORLP00000030750	JunB proto-oncogene, AP-1 transcription factor subunit b.	FOS-like antigen 1a.	0.841
LOC101166988	LOC101156980	ENSORLP00000008562	ENSORLP00000004023	CRF domain-containing protein.	Uncharacterized protein.	0.834
LOC101166988	crh	ENSORLP00000008562	ENSORLP00000010676	CRF domain-containing protein.	Corticotropin-releasing hormone.	0.906
LOC101166988	crhbp	ENSORLP00000008562	ENSORLP00000002768	CRF domain-containing protein.	Corticotropin releasing hormone binding protein.	0.797
LOC101166988	ucn	ENSORLP00000008562	ENSORLP00000036699	CRF domain-containing protein.	Urotensin 1.	0.926
LOC101169770	H2LLS9_ORYLA	ENSORLP00000018212	ENSORLP00000006994	JunB proto-oncogene, AP-1 transcription factor subunit a.	Si:dkey-23i12.7.	0.696
LOC101169770	fosl1	ENSORLP00000018212	ENSORLP00000030750	JunB proto-oncogene, AP-1 transcription factor subunit a.	FOS-like antigen 1a.	0.841
LOC101169963	LOC100125474	ENSORLP00000038112	ENSORLP00000000394	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Hydroxysteroid (11-beta) dehydrogenase 2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.567