(15 nodes) Determination of ventral identity network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101166215	Zinc finger RNA binding protein 2. (1014 aa)
	ift46	Intraflagellar transport 46 homolog (Chlamydomonas). (316 aa)
	LOC101172048	Myc associated factor X. (160 aa)
	LOC101171064	Growth differentiation factor 6a. (437 aa)
	gdf5	Growth differentiation factor 5. (567 aa)
	LOC101154808	Uncharacterized protein. (218 aa)
	aida	Axin interactor, dorsalization associated. (305 aa)
	zfr	Zinc finger RNA binding protein. (1064 aa)
	tll1	Metalloendopeptidase. (1023 aa)
	LOC101160003	Mothers against decapentaplegic homolog. (464 aa)
	ppp4c	Serine/threonine-protein phosphatase. (311 aa)
	MAX	BHLH domain-containing protein. (157 aa)
	LOC100125511	Metalloendopeptidase. (970 aa)
	bmp2	TGF_BETA_2 domain-containing protein. (413 aa)
	chrd	Chordin; Belongs to the chordin family. (946 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100125511	chrd	ENSORLP00000013996	ENSORLP00000011912	Metalloendopeptidase.	Chordin; Belongs to the chordin family.	0.844
LOC101154808	ift46	ENSORLP00000033805	ENSORLP00000040287	Uncharacterized protein.	Intraflagellar transport 46 homolog (Chlamydomonas).	0.548
LOC101160003	LOC101171064	ENSORLP00000030196	ENSORLP00000038952	Mothers against decapentaplegic homolog.	Growth differentiation factor 6a.	0.403
LOC101160003	bmp2	ENSORLP00000030196	ENSORLP00000012259	Mothers against decapentaplegic homolog.	TGF_BETA_2 domain-containing protein.	0.753
LOC101160003	chrd	ENSORLP00000030196	ENSORLP00000011912	Mothers against decapentaplegic homolog.	Chordin; Belongs to the chordin family.	0.578
LOC101171064	LOC101160003	ENSORLP00000038952	ENSORLP00000030196	Growth differentiation factor 6a.	Mothers against decapentaplegic homolog.	0.403
LOC101171064	bmp2	ENSORLP00000038952	ENSORLP00000012259	Growth differentiation factor 6a.	TGF_BETA_2 domain-containing protein.	0.411
LOC101171064	chrd	ENSORLP00000038952	ENSORLP00000011912	Growth differentiation factor 6a.	Chordin; Belongs to the chordin family.	0.933
bmp2	LOC101160003	ENSORLP00000012259	ENSORLP00000030196	TGF_BETA_2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.753
bmp2	LOC101171064	ENSORLP00000012259	ENSORLP00000038952	TGF_BETA_2 domain-containing protein.	Growth differentiation factor 6a.	0.411
bmp2	chrd	ENSORLP00000012259	ENSORLP00000011912	TGF_BETA_2 domain-containing protein.	Chordin; Belongs to the chordin family.	0.983
bmp2	gdf5	ENSORLP00000012259	ENSORLP00000038910	TGF_BETA_2 domain-containing protein.	Growth differentiation factor 5.	0.411
chrd	LOC100125511	ENSORLP00000011912	ENSORLP00000013996	Chordin; Belongs to the chordin family.	Metalloendopeptidase.	0.844
chrd	LOC101160003	ENSORLP00000011912	ENSORLP00000030196	Chordin; Belongs to the chordin family.	Mothers against decapentaplegic homolog.	0.578
chrd	LOC101171064	ENSORLP00000011912	ENSORLP00000038952	Chordin; Belongs to the chordin family.	Growth differentiation factor 6a.	0.933
chrd	bmp2	ENSORLP00000011912	ENSORLP00000012259	Chordin; Belongs to the chordin family.	TGF_BETA_2 domain-containing protein.	0.983
chrd	gdf5	ENSORLP00000011912	ENSORLP00000038910	Chordin; Belongs to the chordin family.	Growth differentiation factor 5.	0.933
chrd	tll1	ENSORLP00000011912	ENSORLP00000031923	Chordin; Belongs to the chordin family.	Metalloendopeptidase.	0.844
gdf5	bmp2	ENSORLP00000038910	ENSORLP00000012259	Growth differentiation factor 5.	TGF_BETA_2 domain-containing protein.	0.411
gdf5	chrd	ENSORLP00000038910	ENSORLP00000011912	Growth differentiation factor 5.	Chordin; Belongs to the chordin family.	0.933