STRINGSTRING
LOC101157986 LOC101157986 bbs4 bbs4 pax2 pax2 LOC101169470 LOC101169470 LOC111949083 LOC111949083 gdf5 gdf5 LOC101171064 LOC101171064 ubr3 ubr3 LOC101166746 LOC101166746 LOC101168687 LOC101168687 phactr4 phactr4 LOC101159737 LOC101159737 atf4 atf4 pax8 pax8 LOC101155219 LOC101155219 lhx1 lhx1 rax rax naglu naglu ENSORLP00000041947 ENSORLP00000041947 fgf8 fgf8 LOC101167732 LOC101167732 nectin1 nectin1 six3-2 six3-2 LOC101165469 LOC101165469 sdk2 sdk2 ENSORLP00000044416 ENSORLP00000044416 fat3 fat3 med27 med27 LOC101155494 LOC101155494 crb2 crb2 LOC101165970 LOC101165970 vax2 vax2 tatdn1 tatdn1 LOC101161908 LOC101161908 mib1 mib1 LOC101173141 LOC101173141 LOC101167129 LOC101167129 thrb thrb foxh1 foxh1 RING1 RING1 bves bves tspan12 tspan12 ahi1 ahi1 Cep290 Cep290 LOC101174677 LOC101174677 LOC101157139 LOC101157139 abhd12 abhd12 VANGL2 VANGL2 H2LCR5_ORYLA H2LCR5_ORYLA H2LDU0_ORYLA H2LDU0_ORYLA mab21l1 mab21l1 H2LG67_ORYLA H2LG67_ORYLA H2LIE7_ORYLA H2LIE7_ORYLA axin1 axin1 LOC100301625 LOC100301625 H2LKM3_ORYLA H2LKM3_ORYLA agtpbp1 agtpbp1 pax5 pax5 dctn2 dctn2 rnf2 rnf2 tbc1d20 tbc1d20 ift57 ift57 LOC101157444 LOC101157444 LOC101167360 LOC101167360 med29 med29 foxn4 foxn4 mab21l2 mab21l2 LOC101175353 LOC101175353 LOC101162937 LOC101162937 crb1 crb1 epha4 epha4 sdk1 sdk1 H2LZ82_ORYLA H2LZ82_ORYLA bhlhe23 bhlhe23 pax6 pax6 LOC101156111 LOC101156111 eys eys six3 six3 shh shh adgrv1 adgrv1 Impg2 Impg2 mpp5 mpp5 fjx1 fjx1 rorb rorb foxc1 foxc1 ENSORLP00000029707 ENSORLP00000029707 egr1 egr1 tdrd7 tdrd7 ENSORLP00000029691 ENSORLP00000029691 kif22 kif22 LOC101169362 LOC101169362 LOC101163696 LOC101163696 LOC101162482 LOC101162482 neurod1 neurod1 med24 med24 Nf1 Nf1 MPP5 MPP5 ENSORLP00000025959 ENSORLP00000025959 ENSORLP00000025923 ENSORLP00000025923 H2N322_ORYLA H2N322_ORYLA pitx2 pitx2 poc1b poc1b suv39h1 suv39h1 LOC101155653 LOC101155653 MFAP2 MFAP2 prkci prkci rtn4ip1 rtn4ip1 aqp1 aqp1 SP3 SP3 bbs5 bbs5 cdh2 cdh2 LOC101167616 LOC101167616 ttc8 ttc8 RS1 RS1 rp2 rp2 six6 six6 prdm1 prdm1 mfrp mfrp H2MJT0_ORYLA H2MJT0_ORYLA TBX2 TBX2 H2MIJ3_ORYLA H2MIJ3_ORYLA LOC101160266 LOC101160266 LOC101175519 LOC101175519 LOC101169939 LOC101169939 atoh7 atoh7 vax1 vax1 prdm1b prdm1b LOC101156666 LOC101156666 LOC101154972 LOC101154972 LOC101158262 LOC101158262 fgf3 fgf3 ccnd1 ccnd1 LOC101157279 LOC101157279
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC101157986Sp3b transcription factor. (614 aa)
bbs4Bardet-Biedl syndrome 4. (535 aa)
pax2Paired box 2b. (387 aa)
LOC101169470Activated leukocyte cell adhesion molecule b. (592 aa)
LOC111949083Forkhead box C1. (471 aa)
gdf5Growth differentiation factor 5. (567 aa)
LOC101171064Growth differentiation factor 6a. (437 aa)
ubr3E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (1868 aa)
LOC101166746Phosphatase and actin regulator. (584 aa)
LOC101168687Zgc:153993. (293 aa)
phactr4Phosphatase and actin regulator. (836 aa)
LOC101159737Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family. (269 aa)
atf4BZIP domain-containing protein. (438 aa)
pax8Paired box 8. (444 aa)
LOC101155219Paired domain-containing protein. (485 aa)
lhx1LIM homeobox 1a. (406 aa)
raxRx3 protein. (292 aa)
nagluN-acetylglucosaminidase, alpha. (754 aa)
ENSORLP00000041947SEA domain-containing protein. (1443 aa)
fgf8Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (214 aa)
LOC101167732Microfibril associated protein 5. (125 aa)
nectin1Nectin cell adhesion molecule 1b. (526 aa)
six3-2Homeobox protein SIX3. (323 aa)
LOC101165469Phosphatase and actin regulator. (622 aa)
sdk2Sidekick cell adhesion molecule 2b. (2178 aa)
ENSORLP00000044416Uncharacterized protein. (670 aa)
fat3FAT atypical cadherin 3a. (4612 aa)
med27Mediator complex subunit 27. (317 aa)
LOC101155494Uncharacterized protein. (883 aa)
crb2Uncharacterized protein. (1464 aa)
LOC101165970Retinal homeobox gene 1. (369 aa)
vax2Ventral anterior homeobox 2. (306 aa)
tatdn1TatD DNase domain containing 1. (314 aa)
LOC101161908T-box transcription factor 5a. (525 aa)
mib1Mindbomb E3 ubiquitin protein ligase 1. (1081 aa)
LOC101173141Uncharacterized protein. (435 aa)
LOC101167129High mobility group nucleosome binding domain 6. (96 aa)
thrbThyroid hormone receptor beta. (378 aa)
foxh1Forkhead box H1. (511 aa)
RING1Ring finger protein 1. (388 aa)
bvesBlood vessel epicardial substance. (356 aa)
tspan12Tetraspanin. (330 aa)
ahi1Abelson helper integration site 1. (854 aa)
Cep290Uncharacterized protein. (169 aa)
LOC101174677Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate. (464 aa)
LOC101157139Retinal outer segment membrane protein 1b. (362 aa)
abhd12Abhydrolase domain containing 12. (375 aa)
VANGL2Vang-like protein. (525 aa)
H2LCR5_ORYLAGrowth arrest-specific 1b. (236 aa)
H2LDU0_ORYLAPaired domain-containing protein. (140 aa)
mab21l1Mab-21-like 1. (359 aa)
H2LG67_ORYLAUncharacterized protein. (198 aa)
H2LIE7_ORYLAUncharacterized protein. (1651 aa)
axin1Axin 1. (854 aa)
LOC100301625Forkhead box Q2. (281 aa)
H2LKM3_ORYLAIg-like domain-containing protein. (246 aa)
agtpbp1ATP/GTP binding protein 1. (1237 aa)
pax5Paired box 5. (396 aa)
dctn2Dynactin 2 (p50). (404 aa)
rnf2Ring finger protein 2. (385 aa)
tbc1d20TBC1 domain family, member 20. (428 aa)
ift57Intraflagellar transport 57 homolog (Chlamydomonas). (395 aa)
LOC101157444Immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 3. (1275 aa)
LOC101167360Immunoglobulin superfamily member 22. (1490 aa)
med29Mediator complex subunit 29. (198 aa)
foxn4Forkhead box N4. (516 aa)
mab21l2Mab-21-like 2. (359 aa)
LOC101175353SIX homeobox 7. (259 aa)
LOC101162937Phosphatase and actin regulator 4a. (1122 aa)
crb1Crumbs cell polarity complex component 1. (1325 aa)
epha4Eph receptor A4, like. (990 aa)
sdk1Sidekick cell adhesion molecule 1a. (2140 aa)
H2LZ82_ORYLAUncharacterized protein. (708 aa)
bhlhe23Basic helix-loop-helix family, member e23. (227 aa)
pax6Paired box protein Pax-6; May be a transcription factor with important functions in eye and nasal development; Belongs to the paired homeobox family. (457 aa)
LOC101156111T-box transcription factor 2a. (561 aa)
eysUncharacterized protein. (3018 aa)
six3Homeobox protein SIX3; Transcriptional regulator which can act as both a transcriptional repressor and activator by binding a ATTA homeodomain core recognition sequence on these target genes. During forebrain development represses WNT1 expression allowing zona limitans intrathalamica formation and thereby ensuring proper anterio-posterior patterning of the diencephalon and formation of the rostral diencephalon. Acts as a direct upstream activator of SHH expression in the rostral diencephalon ventral midline and that in turn SHH maintains its expression. In addition, Six3 activity is re [...] (272 aa)
shhHedgehog protein; Intercellular signal essential for a variety of patterning events during development. (414 aa)
adgrv1Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family. (6175 aa)
Impg2Interphotoreceptor matrix proteoglycan 2a. (353 aa)
mpp5Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5); Belongs to the MAGUK family. (646 aa)
fjx1Four-jointed box kinase 1. (422 aa)
rorbRAR-related orphan receptor B. (478 aa)
foxc1Forkhead box C1a. (465 aa)
ENSORLP00000029707Uncharacterized protein. (166 aa)
egr1Early growth response protein; Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3'(EGR-site) in the promoter region of target genes. Binds double-stranded target DNA, irrespective of the cytosine methylation status. Regulates the transcription of numerous target genes, and thereby plays an important role in regulating the response to growth factors, DNA damage, and ischemia. Plays a role in the regulation of cell survival, proliferation and cell death. Belongs to the EGR C2H2-type zinc-finger protein family. (511 aa)
tdrd7Tudor domain containing 7 b. (1136 aa)
ENSORLP00000029691Uncharacterized protein. (1961 aa)
kif22Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (619 aa)
LOC101169362Sidekick cell adhesion molecule 2a. (2155 aa)
LOC101163696Uncharacterized protein. (2368 aa)
LOC101162482Uncharacterized protein. (163 aa)
neurod1Neurogenic differentiation factor. (350 aa)
med24Mediator complex subunit 24. (985 aa)
Nf1Uncharacterized protein. (506 aa)
MPP5Membrane palmitoylated protein 5; Belongs to the MAGUK family. (667 aa)
ENSORLP00000025959PR domain containing 1b, with ZNF domain. (606 aa)
ENSORLP00000025923Uncharacterized protein. (290 aa)
H2N322_ORYLAANK_REP_REGION domain-containing protein. (389 aa)
pitx2Homeobox protein. (366 aa)
poc1bPOC1 centriolar protein B. (519 aa)
suv39h1Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily. (412 aa)
LOC101155653Zgc:63863. (379 aa)
MFAP2Microfibril associated protein 2. (127 aa)
prkciProtein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (554 aa)
rtn4ip1Reticulon 4 interacting protein 1. (402 aa)
aqp1Aquaporin 1a (Colton blood group), tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family. (261 aa)
SP3Sp3a transcription factor. (668 aa)
bbs5Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family. (342 aa)
cdh2Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (908 aa)
LOC101167616Usher syndrome 1C. (529 aa)
ttc8Tetratricopeptide repeat domain 8. (505 aa)
RS1Retinoschisin 1. (253 aa)
rp2Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. (366 aa)
six6SIX homeobox 6a. (245 aa)
prdm1Prdm1a. (845 aa)
mfrpMembrane frizzled-related protein. (495 aa)
H2MJT0_ORYLAUncharacterized protein. (589 aa)
TBX2T-box transcription factor 2. (682 aa)
H2MIJ3_ORYLAUncharacterized protein. (781 aa)
LOC101160266Uncharacterized protein. (1078 aa)
LOC101175519Uncharacterized protein. (464 aa)
LOC101169939RPGRIP1 like. (1240 aa)
atoh7Atonal bHLH transcription factor 7. (142 aa)
vax1Ventral anterior homeobox 1. (323 aa)
prdm1bPrdm1b. (775 aa)
LOC101156666Uncharacterized protein. (1426 aa)
LOC101154972Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (360 aa)
LOC101158262Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (921 aa)
fgf3Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (245 aa)
ccnd1Cyclin D1; Belongs to the cyclin family. (292 aa)
LOC101157279Uncharacterized protein. (619 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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