STRINGSTRING
LOC101158262 LOC101158262 fgf19 fgf19 fgf3 fgf3 polr1b polr1b TMEM100 TMEM100 LOC101157631 LOC101157631 LOC101155037 LOC101155037 LOC101166531 LOC101166531 ppp3r1 ppp3r1 alx1 alx1 leo1 leo1 sema3g sema3g sema6a sema6a pdgfrb pdgfrb LOC101157725 LOC101157725 LOC100301625 LOC100301625 SMAD4 SMAD4 LOC101168447 LOC101168447 H2LKM3_ORYLA H2LKM3_ORYLA pef1 pef1 SEMA4D SEMA4D LOC101164972 LOC101164972 SEMA4F SEMA4F LOC101155173 LOC101155173 lef1 lef1 coro1c coro1c anxa6 anxa6 sema7a sema7a ednra ednra htr2b htr2b LOC101171257 LOC101171257 H2LU26_ORYLA H2LU26_ORYLA gdnf gdnf LOC101156305 LOC101156305 sox9 sox9 kbtbd8 kbtbd8 msc msc wnt2bb wnt2bb LOC101166646 LOC101166646 rflnb rflnb LOC101162937 LOC101162937 LOC100049217 LOC100049217 edn1 edn1 sema3e sema3e LOC101164979 LOC101164979 ednr ednr dicer1 dicer1 LOC101158386 LOC101158386 LOC101168600 LOC101168600 sema4g sema4g foxc1 foxc1 bmp4 bmp4 wdr11 wdr11 LOC101158507 LOC101158507 tgfbr3 tgfbr3 smo smo LOC101164044 LOC101164044 LOC101169812 LOC101169812 LOC101170303 LOC101170303 colec11 colec11 KLHL12 KLHL12 LOC100049292 LOC100049292 LOC101160075 LOC101160075 LOC101161968 LOC101161968 tbx1 tbx1 zfp64 zfp64 LOC105354644 LOC105354644 LOC101173050 LOC101173050 msx1 msx1 LOC105356063 LOC105356063 cdh2 cdh2 dlx2 dlx2 snai2 snai2 LOC100049225 LOC100049225 NRTN NRTN wnt16 wnt16 cep41 cep41 phox2b phox2b fn1 fn1 LOC101162948 LOC101162948 LOC101170114 LOC101170114 LOC101171501 LOC101171501 pdcd6 pdcd6 ENSORLP00000027381 ENSORLP00000027381 LOC101159406 LOC101159406 LOC101168674 LOC101168674 med12 med12 efna1 efna1 ret ret LOC101156117 LOC101156117 LOC101173916 LOC101173916 LOC101171584 LOC101171584 fbxl17 fbxl17 gbx2 gbx2 tcf21 tcf21 sema6d sema6d LOC101160329 LOC101160329 LOC101159436 LOC101159436 LOC101171477 LOC101171477 LOC101155634 LOC101155634 LOC101166949 LOC101166949 sox10 sox10 LOC111948169 LOC111948169 LOC101174943 LOC101174943 akna akna LOC101157201 LOC101157201 SH3PXD2A SH3PXD2A LOC101160830 LOC101160830 LOC101160158 LOC101160158 sema3a sema3a LOC101156556 LOC101156556 sema5b sema5b LOC101169470 LOC101169470 LOC111949083 LOC111949083 rcc2 rcc2 LOC101155422 LOC101155422 sema3c sema3c med13 med13 LOC101163346 LOC101163346 LOC101171739 LOC101171739 LOC101166746 LOC101166746 sema3b sema3b phactr4 phactr4 KCTD15 KCTD15 LOC101174516 LOC101174516 rax rax sema5a sema5a nrp1 nrp1 sema4c sema4c SEMA4G SEMA4G nusap1 nusap1 radil radil wtip wtip LOC101165469 LOC101165469 LOC101172686 LOC101172686 LOC101162736 LOC101162736 sema3d sema3d LOC101163504 LOC101163504 DDX5 DDX5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC101158262Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (921 aa)
fgf19Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (208 aa)
fgf3Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (245 aa)
polr1bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1135 aa)
TMEM100Transmembrane protein 100. (121 aa)
LOC101157631Transforming growth factor beta; Belongs to the TGF-beta family. (444 aa)
LOC101155037Transforming growth factor beta; Belongs to the TGF-beta family. (420 aa)
LOC101166531SH3 and PX domains 2Aa. (1175 aa)
ppp3r1Uncharacterized protein. (170 aa)
alx1ALX homeobox 1. (326 aa)
leo1LEO1 homolog, Paf1/RNA polymerase II complex component. (638 aa)
sema3gSema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family. (776 aa)
sema6aSema domain-containing protein; Belongs to the semaphorin family. (1023 aa)
pdgfrbPlatelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1112 aa)
LOC101157725Collectin subfamily member 10. (218 aa)
LOC100301625Forkhead box Q2. (281 aa)
SMAD4Mothers against decapentaplegic homolog. (510 aa)
LOC101168447BTB domain-containing protein. (514 aa)
H2LKM3_ORYLAIg-like domain-containing protein. (246 aa)
pef1Penta-EF-hand domain containing 1. (263 aa)
SEMA4DSemaphorin 4D; Belongs to the semaphorin family. (903 aa)
LOC101164972Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (381 aa)
SEMA4FSsemaphorin 4F; Belongs to the semaphorin family. (841 aa)
LOC101155173Sema domain-containing protein. (1089 aa)
lef1Lymphoid enhancer-binding factor 1. (379 aa)
coro1cCoronin; Belongs to the WD repeat coronin family. (1195 aa)
anxa6Annexin. (699 aa)
sema7aSemaphorin 7A; Belongs to the semaphorin family. (525 aa)
ednraEndothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family. (439 aa)
htr2b5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled. (473 aa)
LOC101171257Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (343 aa)
H2LU26_ORYLALysyl oxidase-like 4. (342 aa)
gdnfGlial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake. (265 aa)
LOC101156305Transmembrane anterior posterior transformation 1b. (643 aa)
sox9HMG box domain-containing protein. (476 aa)
kbtbd8Kelch repeat and BTB (POZ) domain containing 8. (604 aa)
mscMusculin (activated B-cell factor-1). (166 aa)
wnt2bbProtein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (391 aa)
LOC101166646Coronin; Belongs to the WD repeat coronin family. (493 aa)
rflnbRefilin B. (206 aa)
LOC101162937Phosphatase and actin regulator 4a. (1122 aa)
LOC100049217Muscle segment homeobox 3. (250 aa)
edn1Endothelin 1. (220 aa)
sema3eSema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family. (791 aa)
LOC101164979Transcription activation suppressor b. (1819 aa)
ednrG_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (413 aa)
dicer1Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily. (1888 aa)
LOC101158386Endothelin receptor Ba; Belongs to the G-protein coupled receptor 1 family. (419 aa)
LOC101168600Si:cabz01100188.1. (905 aa)
sema4gUncharacterized protein; Belongs to the semaphorin family. (884 aa)
foxc1Forkhead box C1a. (465 aa)
bmp4Bone morphogenetic protein 4. (441 aa)
wdr11WD repeat domain 11. (1209 aa)
LOC101158507DEAD-box helicase 17; Belongs to the DEAD box helicase family. (648 aa)
tgfbr3Transforming growth factor, beta receptor III. (801 aa)
smoSmoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family. (828 aa)
LOC101164044Uncharacterized protein; Belongs to the semaphorin family. (665 aa)
LOC101169812Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba; Belongs to the semaphorin family. (901 aa)
LOC101170303Semaphorin 4e; Belongs to the semaphorin family. (768 aa)
colec11Collectin sub-family member 11. (273 aa)
KLHL12BTB domain-containing protein. (598 aa)
LOC100049292Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family. (859 aa)
LOC101160075DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (624 aa)
LOC101161968Si:ch211-129c21.1; Belongs to the semaphorin family. (803 aa)
tbx1T-box transcription factor 1. (503 aa)
zfp64Zinc finger protein 64 homolog (mouse). (651 aa)
LOC105354644ZP domain-containing protein. (821 aa)
LOC101173050Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb; Belongs to the semaphorin family. (882 aa)
msx1Muscle segment homeobox 1a. (275 aa)
LOC105356063Uncharacterized protein; Belongs to the semaphorin family. (764 aa)
cdh2Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (908 aa)
dlx2Homeobox domain-containing protein. (277 aa)
snai2Snail family zinc finger 2. (260 aa)
LOC100049225Endothelin receptor type Bb; Belongs to the G-protein coupled receptor 1 family. (427 aa)
NRTNNeurturin. (212 aa)
wnt16Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (349 aa)
cep41Centrosomal protein 41. (394 aa)
phox2bPaired like homeobox 2Bb. (285 aa)
fn1Fibronectin-1. (2503 aa)
LOC101162948Nucleolar and coiled-body phosphoprotein 1. (910 aa)
LOC101170114Mediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (2118 aa)
LOC101171501Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (365 aa)
pdcd6Programmed cell death 6. (185 aa)
ENSORLP00000027381Lysyl oxidase-like 4. (265 aa)
LOC101159406Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa; Belongs to the semaphorin family. (789 aa)
LOC101168674Uncharacterized protein. (179 aa)
med12Mediator complex subunit 12. (2150 aa)
efna1Ephrin-A1b; Belongs to the ephrin family. (263 aa)
retRet proto-oncogene receptor tyrosine kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family. (1144 aa)
LOC101156117Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E; Belongs to the semaphorin family. (1085 aa)
LOC101173916Mothers against decapentaplegic homolog. (538 aa)
LOC101171584Uncharacterized protein; Belongs to the DEAD box helicase family. (630 aa)
fbxl17F-box and leucine-rich repeat protein 17. (622 aa)
gbx2Gastrulation brain homeobox 2. (350 aa)
tcf21Transcription factor 21. (171 aa)
sema6dSema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like; Belongs to the semaphorin family. (1103 aa)
LOC101160329Sema domain-containing protein; Belongs to the semaphorin family. (1157 aa)
LOC101159436Sema domain-containing protein; Belongs to the semaphorin family. (832 aa)
LOC101171477Uncharacterized protein; Belongs to the semaphorin family. (638 aa)
LOC101155634Si:ch211-113g11.6; Belongs to the semaphorin family. (637 aa)
LOC101166949Sema domain-containing protein; Belongs to the semaphorin family. (837 aa)
sox10SRY-box containing gene 10b. (484 aa)
LOC111948169Ephrin-A1a; Belongs to the ephrin family. (222 aa)
LOC101174943Discs, large homolog 5a (Drosophila); Belongs to the MAGUK family. (2042 aa)
aknaUncharacterized protein. (1222 aa)
LOC101157201Si:ch211-176g6.2. (1084 aa)
SH3PXD2ASH3 and PX domains 2A. (1103 aa)
LOC101160830Uncharacterized protein. (259 aa)
LOC101160158Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family. (796 aa)
sema3aSema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family. (796 aa)
LOC101156556Transmembrane anterior posterior transformation 1a. (602 aa)
sema5bSema domain-containing protein. (1139 aa)
LOC101169470Activated leukocyte cell adhesion molecule b. (592 aa)
LOC111949083Forkhead box C1. (471 aa)
rcc2Regulator of chromosome condensation 2. (512 aa)
LOC101155422Uncharacterized protein. (115 aa)
sema3cSema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C; Belongs to the semaphorin family. (763 aa)
med13Mediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (2148 aa)
LOC101163346Bone morphogenetic protein 16. (516 aa)
LOC101171739Si:dkey-49n23.1; Belongs to the semaphorin family. (808 aa)
LOC101166746Phosphatase and actin regulator. (584 aa)
sema3bSema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family. (805 aa)
phactr4Phosphatase and actin regulator. (836 aa)
KCTD15Potassium channel tetramerization domain containing 15. (270 aa)
LOC101174516Sema domain-containing protein; Belongs to the semaphorin family. (772 aa)
raxRx3 protein. (292 aa)
sema5aSema domain-containing protein. (1078 aa)
nrp1Neuropilin; Belongs to the neuropilin family. (938 aa)
sema4cUncharacterized protein; Belongs to the semaphorin family. (864 aa)
SEMA4GSemaphorin 4G; Belongs to the semaphorin family. (905 aa)
nusap1Nucleolar and spindle associated protein 1. (469 aa)
radilRas association and DIL domains. (1172 aa)
wtipWT1 interacting protein. (699 aa)
LOC101165469Phosphatase and actin regulator. (622 aa)
LOC101172686Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family. (445 aa)
LOC101162736Sox10a. (498 aa)
sema3dSema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D; Belongs to the semaphorin family. (792 aa)
LOC101163504Mothers against decapentaplegic homolog. (528 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (631 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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