(12 nodes) Histone H3-K9 methylation network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ehmt2	Euchromatic histone-lysine N-methyltransferase 2. (1187 aa)
	Arid4a	Tudor domain-containing protein. (324 aa)
	arid4b	Translocase of outer mitochondrial membrane 20. (1289 aa)
	LOC101167635	Euchromatic histone-lysine N-methyltransferase 1b. (1331 aa)
	bend3	Uncharacterized protein. (747 aa)
	ENSORLP00000034118	ANK_REP_REGION domain-containing protein. (110 aa)
	suv39h1	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily. (412 aa)
	prdm5	Zinc finger protein. (589 aa)
	LOC101168249	Uncharacterized protein. (895 aa)
	setdb1	SET domain bifurcated histone lysine methyltransferase 1b. (1238 aa)
	H2M348_ORYLA	Tudor-knot domain-containing protein. (682 aa)
	LOC101163233	Uncharacterized protein. (626 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arid4a	H2M348_ORYLA	ENSORLP00000044983	ENSORLP00000012849	Tudor domain-containing protein.	Tudor-knot domain-containing protein.	0.966
Arid4a	arid4b	ENSORLP00000044983	ENSORLP00000042709	Tudor domain-containing protein.	Translocase of outer mitochondrial membrane 20.	0.603
H2M348_ORYLA	Arid4a	ENSORLP00000012849	ENSORLP00000044983	Tudor-knot domain-containing protein.	Tudor domain-containing protein.	0.966
H2M348_ORYLA	arid4b	ENSORLP00000012849	ENSORLP00000042709	Tudor-knot domain-containing protein.	Translocase of outer mitochondrial membrane 20.	0.599
LOC101163233	suv39h1	ENSORLP00000001413	ENSORLP00000024603	Uncharacterized protein.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.430
arid4b	Arid4a	ENSORLP00000042709	ENSORLP00000044983	Translocase of outer mitochondrial membrane 20.	Tudor domain-containing protein.	0.603
arid4b	H2M348_ORYLA	ENSORLP00000042709	ENSORLP00000012849	Translocase of outer mitochondrial membrane 20.	Tudor-knot domain-containing protein.	0.599
ehmt2	suv39h1	ENSORLP00000002388	ENSORLP00000024603	Euchromatic histone-lysine N-methyltransferase 2.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.447
setdb1	suv39h1	ENSORLP00000013295	ENSORLP00000024603	SET domain bifurcated histone lysine methyltransferase 1b.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.540
suv39h1	LOC101163233	ENSORLP00000024603	ENSORLP00000001413	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	Uncharacterized protein.	0.430
suv39h1	ehmt2	ENSORLP00000024603	ENSORLP00000002388	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	Euchromatic histone-lysine N-methyltransferase 2.	0.447
suv39h1	setdb1	ENSORLP00000024603	ENSORLP00000013295	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	SET domain bifurcated histone lysine methyltransferase 1b.	0.540