(13 nodes) Auditory receptor cell stereocilium organization network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pacsin1	Protein kinase C and casein kinase substrate in neurons 1a. (439 aa)
	LOC101158350	Protein kinase C and casein kinase substrate in neurons 1b. (443 aa)
	cdh2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (908 aa)
	tprn	Taperin. (821 aa)
	LOC101156094	Whirlin b. (773 aa)
	LOC101158262	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (921 aa)
	GRXCR2	Glutaredoxin and cysteine rich domain containing 2. (260 aa)
	clrn2	Clarin 2. (233 aa)
	PDZD7	Uncharacterized protein. (899 aa)
	LOC101157152	PDZ domain containing 7a. (976 aa)
	LOC105356814	Stereocilin 1. (1967 aa)
	ENSORLP00000036342	Stereocilin. (1613 aa)
	whrn	Whirlin a. (966 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000036342	GRXCR2	ENSORLP00000036342	ENSORLP00000001969	Stereocilin.	Glutaredoxin and cysteine rich domain containing 2.	0.429
ENSORLP00000036342	clrn2	ENSORLP00000036342	ENSORLP00000009923	Stereocilin.	Clarin 2.	0.478
GRXCR2	ENSORLP00000036342	ENSORLP00000001969	ENSORLP00000036342	Glutaredoxin and cysteine rich domain containing 2.	Stereocilin.	0.429
GRXCR2	LOC101156094	ENSORLP00000001969	ENSORLP00000022185	Glutaredoxin and cysteine rich domain containing 2.	Whirlin b.	0.401
GRXCR2	LOC105356814	ENSORLP00000001969	ENSORLP00000034042	Glutaredoxin and cysteine rich domain containing 2.	Stereocilin 1.	0.429
GRXCR2	clrn2	ENSORLP00000001969	ENSORLP00000009923	Glutaredoxin and cysteine rich domain containing 2.	Clarin 2.	0.674
GRXCR2	whrn	ENSORLP00000001969	ENSORLP00000041625	Glutaredoxin and cysteine rich domain containing 2.	Whirlin a.	0.401
LOC101156094	GRXCR2	ENSORLP00000022185	ENSORLP00000001969	Whirlin b.	Glutaredoxin and cysteine rich domain containing 2.	0.401
LOC101156094	LOC101157152	ENSORLP00000022185	ENSORLP00000029400	Whirlin b.	PDZ domain containing 7a.	0.656
LOC101156094	PDZD7	ENSORLP00000022185	ENSORLP00000014488	Whirlin b.	Uncharacterized protein.	0.656
LOC101156094	whrn	ENSORLP00000022185	ENSORLP00000041625	Whirlin b.	Whirlin a.	0.554
LOC101157152	LOC101156094	ENSORLP00000029400	ENSORLP00000022185	PDZ domain containing 7a.	Whirlin b.	0.656
LOC101157152	PDZD7	ENSORLP00000029400	ENSORLP00000014488	PDZ domain containing 7a.	Uncharacterized protein.	0.553
LOC101157152	whrn	ENSORLP00000029400	ENSORLP00000041625	PDZ domain containing 7a.	Whirlin a.	0.656
LOC101158262	cdh2	ENSORLP00000000094	ENSORLP00000021380	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.901
LOC105356814	GRXCR2	ENSORLP00000034042	ENSORLP00000001969	Stereocilin 1.	Glutaredoxin and cysteine rich domain containing 2.	0.429
LOC105356814	clrn2	ENSORLP00000034042	ENSORLP00000009923	Stereocilin 1.	Clarin 2.	0.478
PDZD7	LOC101156094	ENSORLP00000014488	ENSORLP00000022185	Uncharacterized protein.	Whirlin b.	0.656
PDZD7	LOC101157152	ENSORLP00000014488	ENSORLP00000029400	Uncharacterized protein.	PDZ domain containing 7a.	0.553
PDZD7	whrn	ENSORLP00000014488	ENSORLP00000041625	Uncharacterized protein.	Whirlin a.	0.656