STRINGSTRING
notch1 notch1 LOC101157279 LOC101157279 LOC101170165 LOC101170165 LOC101170271 LOC101170271 bmpr2 bmpr2 nprl3 nprl3 smad6 smad6 ednra ednra edn1 edn1 arid2 arid2 angptl3 angptl3 tab1 tab1 H2MBB3_ORYLA H2MBB3_ORYLA LOC101158990 LOC101158990 dctn5 dctn5 prdm1b prdm1b srf srf LOC101159701 LOC101159701 H2MFW7_ORYLA H2MFW7_ORYLA H2MJT0_ORYLA H2MJT0_ORYLA amotl2 amotl2 prdm1 prdm1 LOC101159857 LOC101159857 gja5 gja5 ENSORLP00000025959 ENSORLP00000025959 Nf1 Nf1 ddit3 ddit3 LOC101169991 LOC101169991 tcf21 tcf21 hpgd hpgd LOC105358811 LOC105358811 ENSORLP00000034403 ENSORLP00000034403 LOC101167461 LOC101167461 LOC101173191 LOC101173191 LOC101169963 LOC101169963 ENSORLP00000039466 ENSORLP00000039466 hectd1 hectd1 fkbp10 fkbp10 LOC101156458 LOC101156458 LOC101171596 LOC101171596 LOC101174459 LOC101174459 LOC105357487 LOC105357487 calcrl calcrl smad7 smad7 LOC101172686 LOC101172686 ENSORLP00000044390 ENSORLP00000044390 ENSORLP00000045784 ENSORLP00000045784
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
notch1Notch receptor 1b. (2507 aa)
LOC101157279Uncharacterized protein. (619 aa)
LOC101170165Mothers against decapentaplegic homolog. (499 aa)
LOC101170271Nerve growth factor receptor a (TNFR superfamily, member 16). (389 aa)
bmpr2Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (1056 aa)
nprl3NPR3-like, GATOR1 complex subunit. (491 aa)
smad6Mothers against decapentaplegic homolog. (488 aa)
ednraEndothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family. (439 aa)
edn1Endothelin 1. (220 aa)
arid2AT rich interactive domain 2 (ARID, RFX-like). (1631 aa)
angptl3Angiopoietin-like 3. (472 aa)
tab1TGF-beta activated kinase 1/MAP3K7 binding protein 1. (504 aa)
H2MBB3_ORYLAVitellogenin domain-containing protein. (793 aa)
LOC101158990Apolipoprotein Bb, tandem duplicate 2. (2459 aa)
dctn5Dynactin 5. (182 aa)
prdm1bPrdm1b. (775 aa)
srfSerum response factor b. (611 aa)
LOC101159701Peptidylprolyl isomerase. (568 aa)
H2MFW7_ORYLABHLH domain-containing protein. (113 aa)
H2MJT0_ORYLAUncharacterized protein. (589 aa)
amotl2Angiomotin like 2a. (697 aa)
prdm1Prdm1a. (845 aa)
LOC101159857Angiomotin like 2b. (688 aa)
gja5Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (371 aa)
ENSORLP00000025959PR domain containing 1b, with ZNF domain. (606 aa)
Nf1Uncharacterized protein. (506 aa)
ddit3CCAAT/enhancer-binding protein-homologous protein. (308 aa)
LOC101169991Uncharacterized protein. (283 aa)
tcf21Transcription factor 21. (171 aa)
hpgd15-hydroxyprostaglandin dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (261 aa)
LOC105358811MADS-box domain-containing protein. (552 aa)
ENSORLP00000034403Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1540 aa)
LOC101167461NK3 homeobox 1. (188 aa)
LOC101173191Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (345 aa)
LOC101169963Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (258 aa)
ENSORLP00000039466Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1375 aa)
hectd1HECT domain containing 1. (2529 aa)
fkbp10Peptidylprolyl isomerase. (564 aa)
LOC101156458Apolipoprotein Ba. (4366 aa)
LOC101171596Notch receptor 1a. (2476 aa)
LOC101174459T-cell acute lymphocytic leukemia 1. (394 aa)
LOC105357487Activin_recp domain-containing protein. (762 aa)
calcrlCalcitonin receptor-like a; Belongs to the G-protein coupled receptor 2 family. (476 aa)
smad7Mothers against decapentaplegic homolog. (375 aa)
LOC101172686Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family. (445 aa)
ENSORLP00000044390Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1450 aa)
ENSORLP00000045784Uncharacterized protein. (77 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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