STRINGSTRING
sox18 sox18 LOC101173916 LOC101173916 sox17 sox17 shh shh SMAD4 SMAD4 LOC101163504 LOC101163504
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sox18Uncharacterized protein. (585 aa)
LOC101173916Mothers against decapentaplegic homolog. (538 aa)
sox17SRY-box containing gene 17. (398 aa)
shhHedgehog protein; Intercellular signal essential for a variety of patterning events during development. (414 aa)
SMAD4Mothers against decapentaplegic homolog. (510 aa)
LOC101163504Mothers against decapentaplegic homolog. (528 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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