STRINGSTRING
sox5 sox5 sox6a sox6a bmpr2 bmpr2 sox6b sox6b LOC101156305 LOC101156305 ccn1 ccn1 bmp4 bmp4 bmp10 bmp10 LOC101156556 LOC101156556 pkdcc pkdcc fgf18 fgf18 LOC101163346 LOC101163346 LOC101157715 LOC101157715 LOC105357487 LOC105357487
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sox5HMG box domain-containing protein. (880 aa)
sox6aHMG box domain-containing protein. (814 aa)
bmpr2Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (1056 aa)
sox6bSRY-box containing gene 6b. (804 aa)
LOC101156305Transmembrane anterior posterior transformation 1b. (643 aa)
ccn1Cellular communication network factor 1. (376 aa)
bmp4Bone morphogenetic protein 4. (441 aa)
bmp10Bone morphogenetic protein 10. (488 aa)
LOC101156556Transmembrane anterior posterior transformation 1a. (602 aa)
pkdccProtein kinase domain containing, cytoplasmic b. (473 aa)
fgf18Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family. (210 aa)
LOC101163346Bone morphogenetic protein 16. (516 aa)
LOC101157715Bone morphogenetic protein 10, like. (441 aa)
LOC105357487Activin_recp domain-containing protein. (762 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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