(26 nodes) Actin-mediated cell contraction network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2M7G4_ORYLA	Si:dkey-280e21.3. (335 aa)
	LOC101174465	FERM domain-containing protein. (423 aa)
	LOC101167617	Myosin, light chain 6, alkali, smooth muscle and non-muscle. (209 aa)
	scn3b	Sodium channel, voltage-gated, type III, beta. (216 aa)
	nup155	Nucleoporin 155. (1368 aa)
	LOC101155575	Uncharacterized protein. (1806 aa)
	LOC101159760	Ig-like domain-containing protein. (235 aa)
	LOC101167400	Uncharacterized protein. (212 aa)
	shtn1	Shootin 1. (491 aa)
	LOC101161541	Potassium voltage-gated channel, KQT-like subfamily, member 1.1; Belongs to the potassium channel family. (695 aa)
	frmd6	FERM domain containing 6. (602 aa)
	scn2b	Sodium channel, voltage-gated, type II, beta. (220 aa)
	LOC101174227	Uncharacterized protein. (213 aa)
	LOC101166715	Uncharacterized protein; Belongs to the potassium channel family. (719 aa)
	kcne4	Potassium voltage-gated channel, Isk-related family, member 4. (176 aa)
	ENSORLP00000033307	Uncharacterized protein. (126 aa)
	LOC101160287	Uncharacterized protein. (194 aa)
	LOC101173650	FERM domain-containing protein. (565 aa)
	LOC101169965	Sodium channel, voltage-gated, type IV, beta b. (221 aa)
	limch1	LIM and calponin homology domains 1b. (1051 aa)
	LOC101163457	Ependymin related 1. (214 aa)
	LOC101164937	Coiled-coil domain containing 88C. (1911 aa)
	LOC101162070	Sodium channel, voltage-gated, type I, beta a. (275 aa)
	LOC101174703	Ependymin-like 1. (197 aa)
	LOC101174464	Uncharacterized protein. (235 aa)
	LOC101169720	Sodium channel, voltage-gated, type IV, beta a. (232 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000033307	LOC101161541	ENSORLP00000033307	ENSORLP00000043809	Uncharacterized protein.	Potassium voltage-gated channel, KQT-like subfamily, member 1.1; Belongs to the potassium channel family.	0.978
ENSORLP00000033307	LOC101166715	ENSORLP00000033307	ENSORLP00000034183	Uncharacterized protein.	Uncharacterized protein; Belongs to the potassium channel family.	0.978
ENSORLP00000033307	kcne4	ENSORLP00000033307	ENSORLP00000033716	Uncharacterized protein.	Potassium voltage-gated channel, Isk-related family, member 4.	0.461
LOC101159760	LOC101162070	ENSORLP00000011176	ENSORLP00000021006	Ig-like domain-containing protein.	Sodium channel, voltage-gated, type I, beta a.	0.569
LOC101159760	LOC101169720	ENSORLP00000011176	ENSORLP00000015125	Ig-like domain-containing protein.	Sodium channel, voltage-gated, type IV, beta a.	0.956
LOC101159760	LOC101169965	ENSORLP00000011176	ENSORLP00000028967	Ig-like domain-containing protein.	Sodium channel, voltage-gated, type IV, beta b.	0.916
LOC101159760	scn2b	ENSORLP00000011176	ENSORLP00000037941	Ig-like domain-containing protein.	Sodium channel, voltage-gated, type II, beta.	0.912
LOC101159760	scn3b	ENSORLP00000011176	ENSORLP00000009440	Ig-like domain-containing protein.	Sodium channel, voltage-gated, type III, beta.	0.626
LOC101160287	LOC101167617	ENSORLP00000032543	ENSORLP00000009353	Uncharacterized protein.	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	0.547
LOC101161541	ENSORLP00000033307	ENSORLP00000043809	ENSORLP00000033307	Potassium voltage-gated channel, KQT-like subfamily, member 1.1; Belongs to the potassium channel family.	Uncharacterized protein.	0.978
LOC101161541	LOC101166715	ENSORLP00000043809	ENSORLP00000034183	Potassium voltage-gated channel, KQT-like subfamily, member 1.1; Belongs to the potassium channel family.	Uncharacterized protein; Belongs to the potassium channel family.	0.903
LOC101161541	kcne4	ENSORLP00000043809	ENSORLP00000033716	Potassium voltage-gated channel, KQT-like subfamily, member 1.1; Belongs to the potassium channel family.	Potassium voltage-gated channel, Isk-related family, member 4.	0.676
LOC101162070	LOC101159760	ENSORLP00000021006	ENSORLP00000011176	Sodium channel, voltage-gated, type I, beta a.	Ig-like domain-containing protein.	0.569
LOC101162070	LOC101169720	ENSORLP00000021006	ENSORLP00000015125	Sodium channel, voltage-gated, type I, beta a.	Sodium channel, voltage-gated, type IV, beta a.	0.797
LOC101162070	LOC101169965	ENSORLP00000021006	ENSORLP00000028967	Sodium channel, voltage-gated, type I, beta a.	Sodium channel, voltage-gated, type IV, beta b.	0.618
LOC101162070	scn2b	ENSORLP00000021006	ENSORLP00000037941	Sodium channel, voltage-gated, type I, beta a.	Sodium channel, voltage-gated, type II, beta.	0.916
LOC101162070	scn3b	ENSORLP00000021006	ENSORLP00000009440	Sodium channel, voltage-gated, type I, beta a.	Sodium channel, voltage-gated, type III, beta.	0.619
LOC101166715	ENSORLP00000033307	ENSORLP00000034183	ENSORLP00000033307	Uncharacterized protein; Belongs to the potassium channel family.	Uncharacterized protein.	0.978
LOC101166715	LOC101161541	ENSORLP00000034183	ENSORLP00000043809	Uncharacterized protein; Belongs to the potassium channel family.	Potassium voltage-gated channel, KQT-like subfamily, member 1.1; Belongs to the potassium channel family.	0.903
LOC101166715	kcne4	ENSORLP00000034183	ENSORLP00000033716	Uncharacterized protein; Belongs to the potassium channel family.	Potassium voltage-gated channel, Isk-related family, member 4.	0.676