STRINGSTRING
nhej1 nhej1 xrcc6 xrcc6 prkdc prkdc xrcc5 xrcc5 dclre1c dclre1c ENSORLP00000027136 ENSORLP00000027136 lig4 lig4 LOC101159022 LOC101159022 LOC101166932 LOC101166932
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
nhej1Nonhomologous end-joining factor 1. (312 aa)
xrcc6X-ray repair complementing defective repair in Chinese hamster cells 6. (611 aa)
prkdcProtein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (3962 aa)
xrcc5X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (725 aa)
dclre1cDNA cross-link repair 1C, PSO2 homolog (S. cerevisiae). (622 aa)
ENSORLP00000027136Uncharacterized protein. (194 aa)
lig4DNA ligase. (912 aa)
LOC101159022Uncharacterized protein. (298 aa)
LOC101166932X-ray repair complementing defective repair in Chinese hamster cells 4. (336 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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