STRINGSTRING
ino80 ino80 xpc xpc ddb1 ddb1 pold3 pold3 actr5 actr5 Mc1r Mc1r sirt1 sirt1 ercc1 ercc1 xpa xpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ino80INO80 complex ATPase subunit. (1547 aa)
xpcXeroderma pigmentosum, complementation group C. (925 aa)
ddb1Damage-specific DNA binding protein 1. (1126 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (441 aa)
actr5Actin related protein 5; Belongs to the actin family. (595 aa)
Mc1rMelanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family. (334 aa)
sirt1Deacetylase sirtuin-type domain-containing protein. (680 aa)
ercc1Excision repair cross-complementation group 1. (341 aa)
xpaXeroderma pigmentosum, complementation group A. (277 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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