(8 nodes) Glomerulus vasculature development network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tcf21	Transcription factor 21. (171 aa)
	LOC101156223	Si:dkey-237i9.8. (782 aa)
	ednra	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family. (439 aa)
	LOC101159590	Platelet/endothelial cell adhesion molecule 1. (793 aa)
	LOC101165149	Platelet-derived growth factor beta polypeptide b; Belongs to the PDGF/VEGF growth factor family. (510 aa)
	aqp1	Aquaporin 1a (Colton blood group), tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family. (261 aa)
	pdgfb	Platelet-derived growth factor beta polypeptide a; Belongs to the PDGF/VEGF growth factor family. (553 aa)
	LOC101172686	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family. (445 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101156223	LOC101159590	ENSORLP00000002122	ENSORLP00000015470	Si:dkey-237i9.8.	Platelet/endothelial cell adhesion molecule 1.	0.912
LOC101159590	LOC101156223	ENSORLP00000015470	ENSORLP00000002122	Platelet/endothelial cell adhesion molecule 1.	Si:dkey-237i9.8.	0.912
LOC101172686	ednra	ENSORLP00000044245	ENSORLP00000009301	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	0.903
ednra	LOC101172686	ENSORLP00000009301	ENSORLP00000044245	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	0.903