(24 nodes) Epiboly network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ccn1	Cellular communication network factor 1. (376 aa)
	LOC101158357	Glucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose- phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis. (514 aa)
	RHOB	Ras homolog family member B. (191 aa)
	H2MBJ4_ORYLA	Uncharacterized protein. (306 aa)
	CHUK	Component of inhibitor of nuclear factor kappa B kinase complex. (765 aa)
	LOC101157704	Apelin receptor a; Belongs to the G-protein coupled receptor 1 family. (370 aa)
	prmt7	Protein arginine N-methyltransferase; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Specifically mediates the symmetric dimethylation of histone H4 'Arg-3' to form H4R3me2s. Plays a role in gene imprinting by being r [...] (685 aa)
	LOC105355710	Si:ch211-247j9.1. (672 aa)
	LOC101173444	Uncharacterized protein. (193 aa)
	slc39a6	Solute carrier family 39 member 6. (709 aa)
	LOC101163415	Myocardin related transcription factor Aa. (1117 aa)
	LOC101159348	Link domain-containing protein. (402 aa)
	LOC101158607	Uncharacterized protein. (193 aa)
	bves	Blood vessel epicardial substance. (356 aa)
	arhgap24	Rho GTPase activating protein 24. (824 aa)
	LOC101165277	ADAM metallopeptidase domain 17b. (844 aa)
	LOC101160539	Uncharacterized protein. (218 aa)
	ajuba	Ajuba. (694 aa)
	LOC101171872	ADAM metallopeptidase domain 17a. (850 aa)
	LOC101167618	Uncharacterized protein. (193 aa)
	LOC101155194	Uncharacterized protein. (193 aa)
	LOC101174784	Uncharacterized protein. (822 aa)
	LOC100049520	POU domain protein. (469 aa)
	LOC100049251	Glucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose- phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis. (514 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100049251	LOC101158357	ENSORLP00000008829	ENSORLP00000015542	Glucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose- phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis.	Glucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose- phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis.	0.901
LOC100049520	LOC101159348	ENSORLP00000013122	ENSORLP00000029068	POU domain protein.	Link domain-containing protein.	0.559
LOC101158357	LOC100049251	ENSORLP00000015542	ENSORLP00000008829	Glucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose- phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis.	Glucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose- phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis.	0.901
LOC101159348	LOC100049520	ENSORLP00000029068	ENSORLP00000013122	Link domain-containing protein.	POU domain protein.	0.559
LOC101165277	LOC101171872	ENSORLP00000043138	ENSORLP00000039739	ADAM metallopeptidase domain 17b.	ADAM metallopeptidase domain 17a.	0.902
LOC101171872	LOC101165277	ENSORLP00000039739	ENSORLP00000043138	ADAM metallopeptidase domain 17a.	ADAM metallopeptidase domain 17b.	0.902