8 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101165131	Uncharacterized protein. (149 aa)
	LOC101172311	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (451 aa)
	ramp1	Receptor activity modifying protein 1. (186 aa)
	LOC101159437	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (496 aa)
	LOC101156047	Uncharacterized protein. (165 aa)
	calcr	Calcitonin receptor; Belongs to the G-protein coupled receptor 2 family. (725 aa)
	LOC101155470	Uncharacterized protein. (210 aa)
	calcrl	Calcitonin receptor-like a; Belongs to the G-protein coupled receptor 2 family. (476 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101155470	LOC101156047	ENSORLP00000042859	ENSORLP00000038587	Uncharacterized protein.	Uncharacterized protein.	0.973
LOC101155470	LOC101159437	ENSORLP00000042859	ENSORLP00000036447	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.985
LOC101155470	LOC101165131	ENSORLP00000042859	ENSORLP00000041960	Uncharacterized protein.	Uncharacterized protein.	0.951
LOC101155470	LOC101172311	ENSORLP00000042859	ENSORLP00000000113	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.985
LOC101155470	calcr	ENSORLP00000042859	ENSORLP00000041740	Uncharacterized protein.	Calcitonin receptor; Belongs to the G-protein coupled receptor 2 family.	0.907
LOC101155470	calcrl	ENSORLP00000042859	ENSORLP00000043963	Uncharacterized protein.	Calcitonin receptor-like a; Belongs to the G-protein coupled receptor 2 family.	0.990
LOC101155470	ramp1	ENSORLP00000042859	ENSORLP00000022680	Uncharacterized protein.	Receptor activity modifying protein 1.	0.951
LOC101156047	LOC101155470	ENSORLP00000038587	ENSORLP00000042859	Uncharacterized protein.	Uncharacterized protein.	0.973
LOC101156047	LOC101159437	ENSORLP00000038587	ENSORLP00000036447	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.985
LOC101156047	LOC101165131	ENSORLP00000038587	ENSORLP00000041960	Uncharacterized protein.	Uncharacterized protein.	0.949
LOC101156047	LOC101172311	ENSORLP00000038587	ENSORLP00000000113	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.985
LOC101156047	calcr	ENSORLP00000038587	ENSORLP00000041740	Uncharacterized protein.	Calcitonin receptor; Belongs to the G-protein coupled receptor 2 family.	0.900
LOC101156047	calcrl	ENSORLP00000038587	ENSORLP00000043963	Uncharacterized protein.	Calcitonin receptor-like a; Belongs to the G-protein coupled receptor 2 family.	0.989
LOC101156047	ramp1	ENSORLP00000038587	ENSORLP00000022680	Uncharacterized protein.	Receptor activity modifying protein 1.	0.956
LOC101159437	LOC101155470	ENSORLP00000036447	ENSORLP00000042859	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.985
LOC101159437	LOC101156047	ENSORLP00000036447	ENSORLP00000038587	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.985
LOC101159437	LOC101165131	ENSORLP00000036447	ENSORLP00000041960	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.981
LOC101159437	LOC101172311	ENSORLP00000036447	ENSORLP00000000113	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.903
LOC101159437	calcrl	ENSORLP00000036447	ENSORLP00000043963	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Calcitonin receptor-like a; Belongs to the G-protein coupled receptor 2 family.	0.903
LOC101159437	ramp1	ENSORLP00000036447	ENSORLP00000022680	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Receptor activity modifying protein 1.	0.981