STRINGSTRING
SLITRK1 SLITRK1 LOC101157661 LOC101157661 clstn2 clstn2 lrfn5 lrfn5 LOC101171214 LOC101171214 LOC101166581 LOC101166581 LOC101168898 LOC101168898 LOC101155858 LOC101155858 LOC105354210 LOC105354210 cacng4 cacng4 cacng2 cacng2 CACNG2 CACNG2 LOC101167457 LOC101167457 LRFN2 LRFN2 LOC101160640 LOC101160640 GRIN3A GRIN3A LOC101166500 LOC101166500 LOC101165720 LOC101165720 cacng3 cacng3 LOC101174444 LOC101174444 grin3b grin3b neto1 neto1 lrrtm2 lrrtm2 clstn1 clstn1 LOC105356388 LOC105356388 lrfn1 lrfn1 LOC101170837 LOC101170837
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SLITRK1SLIT and NTRK like family member 1. (693 aa)
LOC101157661Leucine rich repeat and fibronectin type III domain containing 2b. (755 aa)
clstn2Uncharacterized protein. (928 aa)
lrfn5Leucine rich repeat and fibronectin type III domain containing 5. (900 aa)
LOC101171214Leucine rich repeat and fibronectin type III domain containing 5b. (875 aa)
LOC101166581Calsyntenin 2. (990 aa)
LOC101168898Neuropilin (NRP) and tolloid (TLL)-like 1. (410 aa)
LOC101155858Interleukin 1 receptor accessory protein-like 2. (722 aa)
LOC105354210Si:ch73-330k17.3. (192 aa)
cacng4Voltage-dependent calcium channel gamma-4 subunit; Regulates the activity of L-type calcium channels that contain CACNA1C as pore-forming subunit (By similarity). Regulates the trafficking and gating properties of AMPA-selective glutamate receptors (AMPARs), including GRIA1 and GRIA4. Promotes their targeting to the cell membrane and synapses and modulates their gating properties by slowing their rates of activation, deactivation and desensitization and by mediating their resensitization; Belongs to the PMP-22/EMP/MP20 family. CACNG subfamily. (330 aa)
cacng2Voltage-dependent calcium channel gamma-2 subunit; Regulates the trafficking and gating properties of AMPA- selective glutamate receptors (AMPARs). Promotes their targeting to the cell membrane and synapses and modulates their gating properties by slowing their rates of activation, deactivation and desensitization. Does not show subunit-specific AMPA receptor regulation and regulates all AMPAR subunits. Thought to stabilize the calcium channel in an inactivated (closed) state; Belongs to the PMP-22/EMP/MP20 family. CACNG subfamily. (322 aa)
CACNG2Voltage-dependent calcium channel gamma-2 subunit; Regulates the trafficking and gating properties of AMPA- selective glutamate receptors (AMPARs). Promotes their targeting to the cell membrane and synapses and modulates their gating properties by slowing their rates of activation, deactivation and desensitization. Does not show subunit-specific AMPA receptor regulation and regulates all AMPAR subunits. Thought to stabilize the calcium channel in an inactivated (closed) state; Belongs to the PMP-22/EMP/MP20 family. CACNG subfamily. (326 aa)
LOC101167457Voltage-dependent calcium channel gamma-4 subunit; Regulates the activity of L-type calcium channels that contain CACNA1C as pore-forming subunit (By similarity). Regulates the trafficking and gating properties of AMPA-selective glutamate receptors (AMPARs), including GRIA1 and GRIA4. Promotes their targeting to the cell membrane and synapses and modulates their gating properties by slowing their rates of activation, deactivation and desensitization and by mediating their resensitization; Belongs to the PMP-22/EMP/MP20 family. CACNG subfamily. (324 aa)
LRFN2Leucine rich repeat and fibronectin type III domain containing 2. (788 aa)
LOC101160640Neuroplastin b. (394 aa)
GRIN3AGlutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1216 aa)
LOC101166500Adenylate cyclase type 1; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling. (1167 aa)
LOC101165720Adenylate cyclase type 1; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling. (1110 aa)
cacng3Calcium voltage-gated channel auxiliary subunit gamma 3. (315 aa)
LOC101174444Si:dkey-28o19.1. (629 aa)
grin3bGlutamate receptor, ionotropic, N-methyl-D-aspartate 3Ba; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1333 aa)
neto1Neuropilin (NRP) and tolloid (TLL)-like 1, like. (565 aa)
lrrtm2Leucine rich repeat transmembrane neuronal 2. (547 aa)
clstn1Calsyntenin 1. (981 aa)
LOC105356388Leucine rich repeat and fibronectin type III domain containing 4b. (502 aa)
lrfn1Leucine rich repeat and fibronectin type III domain containing 1. (754 aa)
LOC101170837Uncharacterized protein. (284 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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