(41 nodes) ATP-dependent chromatin remodeler activity network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	chd1l	Chromodomain helicase DNA binding protein 1-like. (900 aa)
	btaf1	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated. (1852 aa)
	hells	Helicase, lymphoid specific. (853 aa)
	LOC101166729	PHD-type domain-containing protein. (1402 aa)
	H2LDS1_ORYLA	Chromo domain-containing protein. (490 aa)
	smarcad1	Uncharacterized protein. (1052 aa)
	atrx	ATRX chromatin remodeler. (2095 aa)
	LOC101174845	Chromodomain helicase DNA binding protein 4a. (1950 aa)
	LOC101167742	Chromodomain helicase DNA binding protein 3. (1603 aa)
	chd2	Chromodomain helicase DNA binding protein 2. (1815 aa)
	rad54b	RAD54 homolog B. (935 aa)
	LOC101171430	Uncharacterized protein. (1871 aa)
	chd8	Chromodomain-helicase-DNA-binding protein 8; DNA helicase that acts as a chromatin remodeling factor and regulates transcription. Acts as a transcription repressor by remodeling chromatin structure and recruiting histone H1 to target genes. Suppresses p53/TP53-mediated apoptosis by recruiting histone H1 and preventing p53/TP53 transactivation activity. Acts as a negative regulator of Wnt signaling pathway by regulating beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-targeted gene expression by being recruited specifically to the promoter regions of several CTNNB1 responsive [...] (2553 aa)
	hltf	Helicase-like transcription factor. (1037 aa)
	srcap	Snf2-related CREBBP activator protein. (4062 aa)
	chd7	Chromodomain helicase DNA binding protein 7. (3307 aa)
	ep400	E1A binding protein p400. (2905 aa)
	chd1	Chromodomain helicase DNA binding protein 1. (1767 aa)
	smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a. (1621 aa)
	aire	Autoimmune regulator. (424 aa)
	smarcal1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (893 aa)
	chd5	Uncharacterized protein. (1782 aa)
	ino80	INO80 complex ATPase subunit. (1547 aa)
	ENSORLP00000027107	Excision repair cross-complementation group 6-like. (632 aa)
	rad54l2	RAD54 like 2. (1479 aa)
	LOC101162023	Uncharacterized protein. (1660 aa)
	chd4	Uncharacterized protein. (1969 aa)
	rad54l	RAD54 like. (733 aa)
	rsf1	Uncharacterized protein. (1090 aa)
	MPHOSPH9	Uncharacterized protein. (1187 aa)
	zranb3	Zinc finger, RAN-binding domain containing 3. (1109 aa)
	ENSORLP00000033531	CHDCT2 domain-containing protein. (247 aa)
	ttf2	Uncharacterized protein. (1095 aa)
	smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1039 aa)
	chd9	Chromodomain helicase DNA binding protein 9. (3018 aa)
	LOC101161713	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2. (1581 aa)
	shprh	SNF2 histone linker PHD RING helicase. (1716 aa)
	LOC101167365	Uncharacterized protein. (1493 aa)
	ercc6l2	Excision repair cross-complementation group 6-like 2. (1421 aa)
	ercc6	Excision repair cross-complementation group 6. (1342 aa)
	LOC101160234	Bromo domain-containing protein. (1556 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000027107	ENSORLP00000033531	ENSORLP00000027107	ENSORLP00000033531	Excision repair cross-complementation group 6-like.	CHDCT2 domain-containing protein.	0.447
ENSORLP00000027107	btaf1	ENSORLP00000027107	ENSORLP00000000864	Excision repair cross-complementation group 6-like.	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated.	0.440
ENSORLP00000027107	chd1l	ENSORLP00000027107	ENSORLP00000004584	Excision repair cross-complementation group 6-like.	Chromodomain helicase DNA binding protein 1-like.	0.543
ENSORLP00000027107	hells	ENSORLP00000027107	ENSORLP00000001208	Excision repair cross-complementation group 6-like.	Helicase, lymphoid specific.	0.596
ENSORLP00000027107	rad54b	ENSORLP00000027107	ENSORLP00000011190	Excision repair cross-complementation group 6-like.	RAD54 homolog B.	0.469
ENSORLP00000027107	rad54l	ENSORLP00000027107	ENSORLP00000029824	Excision repair cross-complementation group 6-like.	RAD54 like.	0.469
ENSORLP00000027107	smarca5	ENSORLP00000027107	ENSORLP00000036038	Excision repair cross-complementation group 6-like.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.524
ENSORLP00000033531	ENSORLP00000027107	ENSORLP00000033531	ENSORLP00000027107	CHDCT2 domain-containing protein.	Excision repair cross-complementation group 6-like.	0.447
ENSORLP00000033531	chd1	ENSORLP00000033531	ENSORLP00000018273	CHDCT2 domain-containing protein.	Chromodomain helicase DNA binding protein 1.	0.503
ENSORLP00000033531	chd1l	ENSORLP00000033531	ENSORLP00000004584	CHDCT2 domain-containing protein.	Chromodomain helicase DNA binding protein 1-like.	0.834
ENSORLP00000033531	chd2	ENSORLP00000033531	ENSORLP00000010555	CHDCT2 domain-containing protein.	Chromodomain helicase DNA binding protein 2.	0.467
ENSORLP00000033531	ercc6	ENSORLP00000033531	ENSORLP00000041954	CHDCT2 domain-containing protein.	Excision repair cross-complementation group 6.	0.407
ENSORLP00000033531	hells	ENSORLP00000033531	ENSORLP00000001208	CHDCT2 domain-containing protein.	Helicase, lymphoid specific.	0.785
ENSORLP00000033531	rad54l	ENSORLP00000033531	ENSORLP00000029824	CHDCT2 domain-containing protein.	RAD54 like.	0.421
ENSORLP00000033531	smarca5	ENSORLP00000033531	ENSORLP00000036038	CHDCT2 domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.750
ENSORLP00000033531	smarcad1	ENSORLP00000033531	ENSORLP00000006132	CHDCT2 domain-containing protein.	Uncharacterized protein.	0.531
H2LDS1_ORYLA	LOC101160234	ENSORLP00000004085	ENSORLP00000044208	Chromo domain-containing protein.	Bromo domain-containing protein.	0.476
H2LDS1_ORYLA	btaf1	ENSORLP00000004085	ENSORLP00000000864	Chromo domain-containing protein.	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated.	0.600
H2LDS1_ORYLA	chd1l	ENSORLP00000004085	ENSORLP00000004584	Chromo domain-containing protein.	Chromodomain helicase DNA binding protein 1-like.	0.450
H2LDS1_ORYLA	hells	ENSORLP00000004085	ENSORLP00000001208	Chromo domain-containing protein.	Helicase, lymphoid specific.	0.449