STRINGSTRING
LOC101172686 LOC101172686 fgf3 fgf3 fst fst alx1 alx1 H2LCR5_ORYLA H2LCR5_ORYLA leo1 leo1 cyp26b1 cyp26b1 LOC101162917 LOC101162917 mab21l1 mab21l1 dlx3 dlx3 dlx5 dlx5 pdgfrb pdgfrb cep55 cep55 H2LKM3_ORYLA H2LKM3_ORYLA rnf2 rnf2 nipbl nipbl wdr19 wdr19 rad21 rad21 ALX3 ALX3 LOC101169745 LOC101169745 ednra ednra RIC1 RIC1 LOC101156754 LOC101156754 mab21l2 mab21l2 LOC101156305 LOC101156305 LOC101161576 LOC101161576 fgf4 fgf4 LOC101160069 LOC101160069 bmp2 bmp2 LOC101162457 LOC101162457 shh shh foxn3 foxn3 dicer1 dicer1 wnt4 wnt4 rbm24 rbm24 LOC101173147 LOC101173147 ilvbl ilvbl mmachc mmachc usp37 usp37 tbx1 tbx1 disp1 disp1 nbas nbas gata3 gata3 dlx2 dlx2 sec23a sec23a pitx2 pitx2 frem1 frem1 hand2 hand2 med12 med12 gnptab gnptab usp44 usp44 egr1 egr1 fam20b fam20b kras kras RING1 RING1 bap1 bap1 wnt5b wnt5b rab23 rab23 ENSORLP00000035411 ENSORLP00000035411 LOC101160830 LOC101160830 LOC101174296 LOC101174296 setd2 setd2 LOC101156556 LOC101156556 LOC101169470 LOC101169470 dlx1 dlx1 TGFBR2 TGFBR2 ift140 ift140 fgf8 fgf8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC101172686Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family. (445 aa)
fgf3Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (245 aa)
fstFollistatin a. (321 aa)
alx1ALX homeobox 1. (326 aa)
H2LCR5_ORYLAGrowth arrest-specific 1b. (236 aa)
leo1LEO1 homolog, Paf1/RNA polymerase II complex component. (638 aa)
cyp26b1Cytochrome P450 26B1; Belongs to the cytochrome P450 family. (512 aa)
LOC101162917Fras1 related extracellular matrix 1b. (1904 aa)
mab21l1Mab-21-like 1. (359 aa)
dlx3Distal-less homeobox 3b. (278 aa)
dlx5Distal-less homeobox 5a. (296 aa)
pdgfrbPlatelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1112 aa)
cep55Centrosomal protein 55 like. (499 aa)
H2LKM3_ORYLAIg-like domain-containing protein. (246 aa)
rnf2Ring finger protein 2. (385 aa)
nipblNipped-B protein. (2335 aa)
wdr19WD repeat domain 19. (1347 aa)
rad21Uncharacterized protein. (636 aa)
ALX3ALX homeobox 3. (369 aa)
LOC101169745Sharpin and rbck1 related. (709 aa)
ednraEndothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family. (439 aa)
RIC1RIC1 homolog, RAB6A GEF complex partner 1. (1398 aa)
LOC101156754Nipped-B protein. (2658 aa)
mab21l2Mab-21-like 2. (359 aa)
LOC101156305Transmembrane anterior posterior transformation 1b. (643 aa)
LOC101161576RNA binding motif protein 24b. (237 aa)
fgf4Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (188 aa)
LOC101160069Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (448 aa)
bmp2TGF_BETA_2 domain-containing protein. (413 aa)
LOC101162457RNA polymerase I and III subunit D. (153 aa)
shhHedgehog protein; Intercellular signal essential for a variety of patterning events during development. (414 aa)
foxn3Checkpoint suppressor 1. (478 aa)
dicer1Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily. (1888 aa)
wnt4Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (355 aa)
rbm24RNA binding motif protein 24a. (232 aa)
LOC101173147RAD21 cohesin complex component like 1. (539 aa)
ilvblIlvB (bacterial acetolactate synthase)-like; Belongs to the TPP enzyme family. (626 aa)
mmachcMetabolism of cobalamin associated C. (329 aa)
usp37Ubiquitin carboxyl-terminal hydrolase. (925 aa)
tbx1T-box transcription factor 1. (503 aa)
disp1Dispatched homolog 1 (Drosophila). (1362 aa)
nbasNeuroblastoma amplified sequence. (2255 aa)
gata3Uncharacterized protein. (440 aa)
dlx2Homeobox domain-containing protein. (277 aa)
sec23aProtein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (611 aa)
pitx2Homeobox protein. (366 aa)
frem1Fras1 related extracellular matrix 1a. (2073 aa)
hand2Heart and neural crest derivatives expressed 2. (232 aa)
med12Mediator complex subunit 12. (2150 aa)
gnptabN-acetylglucosamine-1-phosphate transferase subunits alpha and beta. (1234 aa)
usp44Ubiquitin carboxyl-terminal hydrolase. (743 aa)
egr1Early growth response protein; Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3'(EGR-site) in the promoter region of target genes. Binds double-stranded target DNA, irrespective of the cytosine methylation status. Regulates the transcription of numerous target genes, and thereby plays an important role in regulating the response to growth factors, DNA damage, and ischemia. Plays a role in the regulation of cell survival, proliferation and cell death. Belongs to the EGR C2H2-type zinc-finger protein family. (511 aa)
fam20bFAM20B glycosaminoglycan xylosylkinase. (409 aa)
krasGTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity (By similarity). Plays an important role in the regulation of cell proliferation. (189 aa)
RING1Ring finger protein 1. (388 aa)
bap1Ubiquitin carboxyl-terminal hydrolase. (726 aa)
wnt5bProtein Wnt-5b; Ligand for members of the frizzled family of seven transmembrane receptors. Probable developmental protein. May be a signaling molecule which affects the development of discrete regions of tissues. Is likely to signal over only few cell diameters (By similarity). (436 aa)
rab23RAB23, member RAS oncogene family. (235 aa)
ENSORLP00000035411Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (114 aa)
LOC101160830Uncharacterized protein. (259 aa)
LOC101174296Nuclear receptor subfamily 2, group F, member 5. (404 aa)
setd2SET domain containing 2, histone lysine methyltransferase. (2587 aa)
LOC101156556Transmembrane anterior posterior transformation 1a. (602 aa)
LOC101169470Activated leukocyte cell adhesion molecule b. (592 aa)
dlx1Distal-less homeobox 1a. (253 aa)
TGFBR2Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (540 aa)
ift140Intraflagellar transport 140 homolog (Chlamydomonas). (1442 aa)
fgf8Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (214 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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