STRINGSTRING
GFI1 GFI1 LOC101172563 LOC101172563 H2LJ06_ORYLA H2LJ06_ORYLA iffo2 iffo2 LOC101167184 LOC101167184 lmnb2 lmnb2 DCAF7 DCAF7 anapc4 anapc4 znf703 znf703 lmna lmna hnrnpu hnrnpu xpot xpot dus3l dus3l TGFB1I1 TGFB1I1 blm blm LOC101170756 LOC101170756 LOC101174605 LOC101174605 kin kin LOC101164503 LOC101164503 ENSORLP00000030309 ENSORLP00000030309 cask cask maea maea gse1 gse1 snw1 snw1 LOC101168604 LOC101168604 GFI1B GFI1B narf narf atxn1 atxn1 iffo1 iffo1 cenpf cenpf LOC105354405 LOC105354405 ZNF703 ZNF703 LOC105354347 LOC105354347 satb1 satb1 fign fign gmcl1 gmcl1 LOC101164288 LOC101164288 LOC101175080 LOC101175080 H2MH09_ORYLA H2MH09_ORYLA gfi1 gfi1 LOC101165590 LOC101165590 nup153 nup153 LOC101164501 LOC101164501 ogg1 ogg1 ebna1bp2 ebna1bp2 nsmf nsmf LOC101170651 LOC101170651 tpr tpr LOC101160250 LOC101160250 tenm1 tenm1 morc2 morc2 LOC101174213 LOC101174213 hlcs hlcs
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GFI1Growth factor independent 1 transcriptional repressor. (383 aa)
LOC101172563Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family. (935 aa)
H2LJ06_ORYLAUncharacterized protein. (189 aa)
iffo2Intermediate filament family orphan 2b; Belongs to the intermediate filament family. (491 aa)
LOC101167184Uncharacterized protein. (506 aa)
lmnb2Lamin B2; Belongs to the intermediate filament family. (579 aa)
DCAF7DDB1 and CUL4 associated factor 7. (342 aa)
anapc4Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family. (805 aa)
znf703Zinc finger protein 703. (587 aa)
lmnaLamin A; Belongs to the intermediate filament family. (634 aa)
hnrnpuHeterogeneous nuclear ribonucleoprotein Ub. (801 aa)
xpotExportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (1041 aa)
dus3ltRNA-dihydrouridine(47) synthase [NAD(P)(+)]. (643 aa)
TGFB1I1Transforming growth factor beta-1-induced transcript 1 protein; Functions as a molecular adapter coordinating multiple protein-protein interactions at the focal adhesion complex and in the nucleus. Links various intracellular signaling modules to plasma membrane receptors and regulates the Wnt and TGFB signaling pathways. (479 aa)
blmUncharacterized protein. (1393 aa)
LOC101170756Uncharacterized protein. (1163 aa)
LOC101174605Intermediate filament family orphan 1a; Belongs to the intermediate filament family. (631 aa)
kinKin17 DNA and RNA binding protein. (391 aa)
LOC101164503Ataxin 1b. (827 aa)
ENSORLP00000030309Uncharacterized protein. (266 aa)
caskUncharacterized protein; Belongs to the MAGUK family. (954 aa)
maeaMacrophage erythroblast attacher. (396 aa)
gse1Gse1 coiled-coil protein. (2121 aa)
snw1SNW domain containing 1. (578 aa)
LOC101168604Lamin L3; Belongs to the intermediate filament family. (704 aa)
GFI1BGrowth factor independent 1B transcriptional repressor. (303 aa)
narfNuclear prelamin A recognition factor; Belongs to the NARF family. (458 aa)
atxn1Ataxin 1a. (800 aa)
iffo1Intermediate filament family orphan 1b; Belongs to the intermediate filament family. (635 aa)
cenpfCentromere protein F. (2835 aa)
LOC105354405AXH domain-containing protein. (680 aa)
ZNF703Zinc finger protein 703. (557 aa)
LOC105354347Uncharacterized protein. (262 aa)
satb1SATB homeobox 1b. (834 aa)
fignFidgetin; Belongs to the AAA ATPase family. (753 aa)
gmcl1BTB domain-containing protein. (502 aa)
LOC101164288Matrin 3-like 1.1. (778 aa)
LOC101175080DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1430 aa)
H2MH09_ORYLATHAP-type domain-containing protein. (145 aa)
gfi1Growth factor independent 1A transcription repressor b. (380 aa)
LOC101165590Translocated promoter region a, nuclear basket protein. (1919 aa)
nup153Nucleoporin 153. (1515 aa)
LOC101164501ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family. (159 aa)
ogg18-oxoguanine DNA glycosylase. (395 aa)
ebna1bp2EBNA1 binding protein 2. (345 aa)
nsmfNMDA receptor synaptonuclear signaling and neuronal migration factor a. (618 aa)
LOC101170651A kinase (PRKA) anchor protein 8-like; Belongs to the AKAP95 family. (670 aa)
tprTranslocated promoter region b, nuclear basket protein. (2165 aa)
LOC101160250Uncharacterized protein; Belongs to the intermediate filament family. (640 aa)
tenm1Teneurin transmembrane protein 1. (2760 aa)
morc2MORC family CW-type zinc finger 2. (847 aa)
LOC101174213Zinc finger protein 503. (561 aa)
hlcsHolocarboxylase synthetase. (916 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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