(8 nodes) ATP-binding cassette (ABC) transporter complex network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101163434	ATP-binding cassette, sub-family H, member 1. (695 aa)
	abcg8	ATP-binding cassette, sub-family G (WHITE), member 8. (653 aa)
	abcg5	ATP-binding cassette, sub-family G (WHITE), member 5. (638 aa)
	LOC101170649	ATP-binding cassette, sub-family G (WHITE), member 2d. (667 aa)
	LOC101164130	ATP-binding cassette, sub-family G (WHITE), member 2c. (618 aa)
	abcd4	ATP-binding cassette, sub-family D (ALD), member 4. (616 aa)
	LOC101173617	Malate synthase-like. (547 aa)
	LOC101167488	ATP-binding cassette, sub-family G (WHITE), member 2a. (654 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101163434	LOC101167488	ENSORLP00000045742	ENSORLP00000003411	ATP-binding cassette, sub-family H, member 1.	ATP-binding cassette, sub-family G (WHITE), member 2a.	0.520
LOC101163434	abcd4	ENSORLP00000045742	ENSORLP00000021831	ATP-binding cassette, sub-family H, member 1.	ATP-binding cassette, sub-family D (ALD), member 4.	0.491
LOC101163434	abcg5	ENSORLP00000045742	ENSORLP00000005856	ATP-binding cassette, sub-family H, member 1.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.470
LOC101164130	LOC101167488	ENSORLP00000011477	ENSORLP00000003411	ATP-binding cassette, sub-family G (WHITE), member 2c.	ATP-binding cassette, sub-family G (WHITE), member 2a.	0.909
LOC101164130	LOC101170649	ENSORLP00000011477	ENSORLP00000008769	ATP-binding cassette, sub-family G (WHITE), member 2c.	ATP-binding cassette, sub-family G (WHITE), member 2d.	0.907
LOC101164130	abcg5	ENSORLP00000011477	ENSORLP00000005856	ATP-binding cassette, sub-family G (WHITE), member 2c.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.816
LOC101167488	LOC101163434	ENSORLP00000003411	ENSORLP00000045742	ATP-binding cassette, sub-family G (WHITE), member 2a.	ATP-binding cassette, sub-family H, member 1.	0.520
LOC101167488	LOC101164130	ENSORLP00000003411	ENSORLP00000011477	ATP-binding cassette, sub-family G (WHITE), member 2a.	ATP-binding cassette, sub-family G (WHITE), member 2c.	0.909
LOC101167488	LOC101170649	ENSORLP00000003411	ENSORLP00000008769	ATP-binding cassette, sub-family G (WHITE), member 2a.	ATP-binding cassette, sub-family G (WHITE), member 2d.	0.901
LOC101167488	abcg5	ENSORLP00000003411	ENSORLP00000005856	ATP-binding cassette, sub-family G (WHITE), member 2a.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.877
LOC101170649	LOC101164130	ENSORLP00000008769	ENSORLP00000011477	ATP-binding cassette, sub-family G (WHITE), member 2d.	ATP-binding cassette, sub-family G (WHITE), member 2c.	0.907
LOC101170649	LOC101167488	ENSORLP00000008769	ENSORLP00000003411	ATP-binding cassette, sub-family G (WHITE), member 2d.	ATP-binding cassette, sub-family G (WHITE), member 2a.	0.901
LOC101170649	abcd4	ENSORLP00000008769	ENSORLP00000021831	ATP-binding cassette, sub-family G (WHITE), member 2d.	ATP-binding cassette, sub-family D (ALD), member 4.	0.433
LOC101170649	abcg5	ENSORLP00000008769	ENSORLP00000005856	ATP-binding cassette, sub-family G (WHITE), member 2d.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.816
abcd4	LOC101163434	ENSORLP00000021831	ENSORLP00000045742	ATP-binding cassette, sub-family D (ALD), member 4.	ATP-binding cassette, sub-family H, member 1.	0.491
abcd4	LOC101170649	ENSORLP00000021831	ENSORLP00000008769	ATP-binding cassette, sub-family D (ALD), member 4.	ATP-binding cassette, sub-family G (WHITE), member 2d.	0.433
abcd4	abcg5	ENSORLP00000021831	ENSORLP00000005856	ATP-binding cassette, sub-family D (ALD), member 4.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.416
abcg5	LOC101163434	ENSORLP00000005856	ENSORLP00000045742	ATP-binding cassette, sub-family G (WHITE), member 5.	ATP-binding cassette, sub-family H, member 1.	0.470
abcg5	LOC101164130	ENSORLP00000005856	ENSORLP00000011477	ATP-binding cassette, sub-family G (WHITE), member 5.	ATP-binding cassette, sub-family G (WHITE), member 2c.	0.816
abcg5	LOC101167488	ENSORLP00000005856	ENSORLP00000003411	ATP-binding cassette, sub-family G (WHITE), member 5.	ATP-binding cassette, sub-family G (WHITE), member 2a.	0.877