(36 nodes) Dendritic spine network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101167572	Protein phosphatase 1 regulatory subunit 9A-like B. (1292 aa)
	KCND3	Potassium voltage-gated channel subfamily D member 3; Belongs to the potassium channel family. (649 aa)
	LOC101154983	Fragile X mental retardation, autosomal homolog 2. (674 aa)
	fxr1	Fragile X mental retardation, autosomal homolog 1. (679 aa)
	LOC101174341	Nuclear receptor subfamily 1, group D, member 4b. (568 aa)
	H2MM45_ORYLA	Si:dkey-91m11.5. (631 aa)
	LOC101165312	PDZ domain-containing protein. (856 aa)
	LOC101169248	Toll-like receptor 7. (1252 aa)
	kcnd1	Potassium voltage-gated channel, Shal-related subfamily, member 1; Belongs to the potassium channel family. (656 aa)
	cttnbp2	Cortactin binding protein 2. (1602 aa)
	ppp1r9a	Protein phosphatase 1, regulatory subunit 9A. (1100 aa)
	grid2ip	Glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, b. (1470 aa)
	LOC105356118	Uncharacterized protein. (477 aa)
	lzts1	Leucine zipper, putative tumor suppressor 1. (651 aa)
	kcnd2	Potassium voltage-gated channel, Shal-related subfamily, member 2; Belongs to the potassium channel family. (595 aa)
	FRMPD4	FERM and PDZ domain containing 4. (1959 aa)
	LOC101165880	BTB domain-containing protein; Belongs to the potassium channel family. (622 aa)
	LOC101159502	Potassium voltage-gated channel, Shal-related subfamily, member 3; Belongs to the potassium channel family. (644 aa)
	frmpd3	FERM and PDZ domain containing 3. (1725 aa)
	als2	Alsin Rho guanine nucleotide exchange factor ALS2 b. (1522 aa)
	nos1	Uncharacterized protein. (1438 aa)
	LOC101160368	Protein phosphatase 1 regulatory subunit 9A-like A. (1414 aa)
	synpo	Uncharacterized protein. (1105 aa)
	cript	Cysteine-rich PDZ-binding protein. (101 aa)
	srgap2	SLIT-ROBO Rho GTPase activating protein 2. (1117 aa)
	TANC2	Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2. (2181 aa)
	DRD5	Dopamine receptor D5; Belongs to the G-protein coupled receptor 1 family. (393 aa)
	ABR	ABR activator of RhoGEF and GTPase. (1096 aa)
	LOC101160910	Glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, a. (1837 aa)
	LOC105356557	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (393 aa)
	dock10	Dedicator of cytokinesis 10; Belongs to the DOCK family. (1989 aa)
	LOC101169046	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (372 aa)
	LOC101164256	Si:dkey-33c9.6. (822 aa)
	fmr1	Fragile X mental retardation 1. (598 aa)
	LOC101174443	BCR activator of RhoGEF and GTPase. (1421 aa)
	LOC101168498	Protein phosphatase 1, regulatory subunit 9Bb. (770 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101154983	fmr1	ENSORLP00000014502	ENSORLP00000011409	Fragile X mental retardation, autosomal homolog 2.	Fragile X mental retardation 1.	0.964
LOC101154983	fxr1	ENSORLP00000014502	ENSORLP00000014777	Fragile X mental retardation, autosomal homolog 2.	Fragile X mental retardation, autosomal homolog 1.	0.912
fmr1	LOC101154983	ENSORLP00000011409	ENSORLP00000014502	Fragile X mental retardation 1.	Fragile X mental retardation, autosomal homolog 2.	0.964
fmr1	fxr1	ENSORLP00000011409	ENSORLP00000014777	Fragile X mental retardation 1.	Fragile X mental retardation, autosomal homolog 1.	0.964
fxr1	LOC101154983	ENSORLP00000014777	ENSORLP00000014502	Fragile X mental retardation, autosomal homolog 1.	Fragile X mental retardation, autosomal homolog 2.	0.912
fxr1	fmr1	ENSORLP00000014777	ENSORLP00000011409	Fragile X mental retardation, autosomal homolog 1.	Fragile X mental retardation 1.	0.964