(4 nodes) Zinc finger, TAZ-type network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101160197	E1A binding protein p300 a. (2781 aa)
	LOC101168870	E1A binding protein p300 b. (2760 aa)
	LOC101163392	CREB binding protein a. (2409 aa)
	adcy9	CREB binding protein b. (2423 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101160197	LOC101163392	ENSORLP00000003103	ENSORLP00000026485	E1A binding protein p300 a.	CREB binding protein a.	0.929
LOC101160197	adcy9	ENSORLP00000003103	ENSORLP00000010434	E1A binding protein p300 a.	CREB binding protein b.	0.929
LOC101163392	LOC101160197	ENSORLP00000026485	ENSORLP00000003103	CREB binding protein a.	E1A binding protein p300 a.	0.929
LOC101163392	LOC101168870	ENSORLP00000026485	ENSORLP00000032567	CREB binding protein a.	E1A binding protein p300 b.	0.930
LOC101168870	LOC101163392	ENSORLP00000032567	ENSORLP00000026485	E1A binding protein p300 b.	CREB binding protein a.	0.930
LOC101168870	adcy9	ENSORLP00000032567	ENSORLP00000010434	E1A binding protein p300 b.	CREB binding protein b.	0.928
adcy9	LOC101160197	ENSORLP00000010434	ENSORLP00000003103	CREB binding protein b.	E1A binding protein p300 a.	0.929
adcy9	LOC101168870	ENSORLP00000010434	ENSORLP00000032567	CREB binding protein b.	E1A binding protein p300 b.	0.928