(47 nodes) Armadillo network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	kpna3	Importin subunit alpha; Belongs to the importin alpha family. (521 aa)
	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1. (478 aa)
	LOC101173369	Junction plakoglobin a. (733 aa)
	apc2	APC regulator of WNT signaling pathway 2. (2227 aa)
	armc2	Armadillo repeat containing 2. (807 aa)
	KPNA2	Importin subunit alpha; Belongs to the importin alpha family. (519 aa)
	kifap3	Kinesin-associated protein 3b. (773 aa)
	heatr3	HEAT repeat containing 3. (680 aa)
	uso1	USO1 vesicle transport factor. (942 aa)
	ARMC6	Armadillo repeat containing 6. (468 aa)
	armc7	Armadillo repeat containing 7. (192 aa)
	LOC101171234	Plakophilin 3b. (776 aa)
	ARVCF	ARVCF delta catenin family member b. (1033 aa)
	kpna4	Importin subunit alpha; Belongs to the importin alpha family. (520 aa)
	LOC101168700	Plakophilin 1b. (723 aa)
	H2LR81_ORYLA	Uncharacterized protein. (269 aa)
	spag6	Sperm associated antigen 6. (507 aa)
	LOC101173737	Armadillo repeat-containing protein 1. (275 aa)
	PKP1	Plakophilin 1. (712 aa)
	unc45b	Unc-45 myosin chaperone B. (931 aa)
	kpna1	Importin subunit alpha; Belongs to the importin alpha family. (538 aa)
	ctnnd1	Uncharacterized protein. (918 aa)
	armc4	Armadillo repeat containing 4. (1017 aa)
	kpna6	Importin subunit alpha; Belongs to the importin alpha family. (538 aa)
	LOC101171688	AP complex subunit beta. (953 aa)
	LOC111947810	Importin subunit alpha; Belongs to the importin alpha family. (506 aa)
	nek10	NIMA-related kinase 10. (998 aa)
	LOC101165191	Armadillo repeat-containing protein 1. (271 aa)
	LOC101165120	Si:dkey-191g9.5. (556 aa)
	kpnb1	Karyopherin (importin) beta 1. (876 aa)
	LOC101165536	Importin subunit alpha; Belongs to the importin alpha family. (510 aa)
	armc3	Armadillo repeat containing 3. (779 aa)
	INSC	INSC spindle orientation adaptor protein. (545 aa)
	LOC101161957	Uncharacterized protein. (1087 aa)
	armc5	Armadillo repeat containing 5. (1210 aa)
	LOC101171502	Uncharacterized protein. (768 aa)
	tmco6	Transmembrane and coiled-coil domains 6. (501 aa)
	PKP3	Plakophilin 3. (829 aa)
	LOC101157472	ARVCF delta catenin family member a. (865 aa)
	apc	APC regulator of WNT signaling pathway. (2204 aa)
	PKP4	Plakophilin 4. (1192 aa)
	ctnnb1	Catenin (cadherin-associated protein), beta 1. (783 aa)
	LOC101160561	Importin subunit alpha; Belongs to the importin alpha family. (522 aa)
	LOC101168153	Catenin (cadherin-associated protein), delta 2b. (1216 aa)
	ap1b1	AP complex subunit beta. (978 aa)
	zer1	Zyg-11 related, cell cycle regulator. (785 aa)
	LOC101170569	Uncharacterized protein. (821 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARMC6	armc2	ENSORLP00000037710	ENSORLP00000016892	Armadillo repeat containing 6.	Armadillo repeat containing 2.	0.489
ARMC6	armc3	ENSORLP00000037710	ENSORLP00000000250	Armadillo repeat containing 6.	Armadillo repeat containing 3.	0.400
ARVCF	LOC101171502	ENSORLP00000040441	ENSORLP00000004535	ARVCF delta catenin family member b.	Uncharacterized protein.	0.623
ARVCF	LOC101173369	ENSORLP00000040441	ENSORLP00000015702	ARVCF delta catenin family member b.	Junction plakoglobin a.	0.726
ARVCF	ctnnb1	ENSORLP00000040441	ENSORLP00000031608	ARVCF delta catenin family member b.	Catenin (cadherin-associated protein), beta 1.	0.842
H2LR81_ORYLA	LOC101171502	ENSORLP00000008578	ENSORLP00000004535	Uncharacterized protein.	Uncharacterized protein.	0.623
H2LR81_ORYLA	LOC101173369	ENSORLP00000008578	ENSORLP00000015702	Uncharacterized protein.	Junction plakoglobin a.	0.650
H2LR81_ORYLA	ctnnb1	ENSORLP00000008578	ENSORLP00000031608	Uncharacterized protein.	Catenin (cadherin-associated protein), beta 1.	0.686
KPNA2	kpnb1	ENSORLP00000017271	ENSORLP00000024757	Importin subunit alpha; Belongs to the importin alpha family.	Karyopherin (importin) beta 1.	0.858
LOC101160561	kpnb1	ENSORLP00000032928	ENSORLP00000024757	Importin subunit alpha; Belongs to the importin alpha family.	Karyopherin (importin) beta 1.	0.858
LOC101161957	LOC101171502	ENSORLP00000002327	ENSORLP00000004535	Uncharacterized protein.	Uncharacterized protein.	0.623
LOC101161957	LOC101173369	ENSORLP00000002327	ENSORLP00000015702	Uncharacterized protein.	Junction plakoglobin a.	0.623
LOC101161957	ctnnb1	ENSORLP00000002327	ENSORLP00000031608	Uncharacterized protein.	Catenin (cadherin-associated protein), beta 1.	0.623
LOC101165536	kpnb1	ENSORLP00000025770	ENSORLP00000024757	Importin subunit alpha; Belongs to the importin alpha family.	Karyopherin (importin) beta 1.	0.858
LOC101168153	LOC101171502	ENSORLP00000034852	ENSORLP00000004535	Catenin (cadherin-associated protein), delta 2b.	Uncharacterized protein.	0.623
LOC101168153	LOC101173369	ENSORLP00000034852	ENSORLP00000015702	Catenin (cadherin-associated protein), delta 2b.	Junction plakoglobin a.	0.650
LOC101168153	ctnnb1	ENSORLP00000034852	ENSORLP00000031608	Catenin (cadherin-associated protein), delta 2b.	Catenin (cadherin-associated protein), beta 1.	0.686
LOC101168700	LOC101171502	ENSORLP00000007934	ENSORLP00000004535	Plakophilin 1b.	Uncharacterized protein.	0.520
LOC101168700	LOC101173369	ENSORLP00000007934	ENSORLP00000015702	Plakophilin 1b.	Junction plakoglobin a.	0.670
LOC101168700	ctnnb1	ENSORLP00000007934	ENSORLP00000031608	Plakophilin 1b.	Catenin (cadherin-associated protein), beta 1.	0.520