53 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrnp25	Small nuclear ribonucleoprotein 25. (180 aa)
	ubqln4	Ubiquilin 4. (584 aa)
	ubtd1	Ubiquitin domain containing 1b. (237 aa)
	prkn	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (466 aa)
	ENSORLP00000045836	Ubiquitin-like domain-containing protein. (88 aa)
	bag1	BCL2 associated athanogene 1. (207 aa)
	LOC101170466	Ubiquitin-like domain-containing protein. (136 aa)
	ddi2	DNA-damage inducible protein 2. (880 aa)
	UBL5	Ubiquitin like 5. (118 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	ENSORLP00000037519	Ubiquitin-like domain-containing protein. (108 aa)
	ublcp1	Ubiquitin-like domain containing CTD phosphatase 1. (363 aa)
	UHRF2	Ubiquitin like with PHD and ring finger domains 2. (913 aa)
	ubl3	Ubiquitin-like protein. (117 aa)
	yod1	YOD1 deubiquitinase. (300 aa)
	sumo4	Small ubiquitin-related modifier. (101 aa)
	ELOB	Ubiquitin-like domain-containing protein. (119 aa)
	ubl7	Ubiquitin-like 7b (bone marrow stromal cell-derived). (390 aa)
	LOC101167062	Tubulin folding cofactor E-like a. (429 aa)
	LOC101166616	Midnolin. (536 aa)
	rad23a	RAD23 homolog A, nucleotide excision repair protein a. (363 aa)
	sacs	Sacsin molecular chaperone. (4579 aa)
	ENSORLP00000031114	Ubiquitin-like domain-containing protein. (90 aa)
	ENSORLP00000027520	Ubiquitin-like domain-containing protein. (92 aa)
	ubtd2	Ubiquitin domain containing 2. (272 aa)
	usp14	Ubiquitin carboxyl-terminal hydrolase. (491 aa)
	faf1	Fas (TNFRSF6) associated factor 1. (674 aa)
	LOC101161084	HERPUD family member 2. (388 aa)
	bag6	BCL2 associated athanogene 6. (1195 aa)
	sf3a1	Splicing factor 3a, subunit 1. (753 aa)
	ubc	Ubiquitin B. (782 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	ubl4a	Ubiquitin like 4A. (155 aa)
	usp48	Ubiquitin specific peptidase 48; Belongs to the peptidase C19 family. (1053 aa)
	sumo2-2	Small ubiquitin-related modifier. (95 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	zfand4	Zinc finger, AN1-type domain 4. (716 aa)
	H2LSA2_ORYLA	ISG15 ubiquitin like modifier. (158 aa)
	tmub1	Transmembrane and ubiquitin-like domain containing 1. (268 aa)
	tbcb	Tubulin folding cofactor B. (246 aa)
	uhrf1	Ubiquitin-like with PHD and ring finger domains 1. (773 aa)
	LOC101166217	RanBP-type and C3HC4-type zinc finger containing 1. (518 aa)
	RAD23B	RAD23 homolog B, nucleotide excision repair protein. (472 aa)
	ubfd1	Ubiquitin family domain containing 1. (285 aa)
	sumo2	Small ubiquitin-related modifier. (96 aa)
	tmub2	Transmembrane and ubiquitin-like domain containing 2. (327 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (801 aa)
	LOC101173950	Ubiquitin-like protein. (117 aa)
	tbce	Tubulin folding cofactor E. (520 aa)
	H2L6N3_ORYLA	Ubiquitin-like domain-containing protein. (87 aa)
	ubac1	UBA domain containing 1. (426 aa)
	sumo1	Small ubiquitin-related modifier. (101 aa)
	LOC101174180	Homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1. (380 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELOB	ENSORLP00000027520	ENSORLP00000034412	ENSORLP00000027520	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.938
ELOB	ENSORLP00000031114	ENSORLP00000034412	ENSORLP00000031114	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.569
ELOB	ENSORLP00000037519	ENSORLP00000034412	ENSORLP00000037519	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.569
ELOB	ENSORLP00000045836	ENSORLP00000034412	ENSORLP00000045836	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.938
ELOB	H2L6N3_ORYLA	ENSORLP00000034412	ENSORLP00000001483	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.569
ELOB	H2LSA2_ORYLA	ENSORLP00000034412	ENSORLP00000008963	Ubiquitin-like domain-containing protein.	ISG15 ubiquitin like modifier.	0.569
ELOB	H2M970_ORYLA	ENSORLP00000034412	ENSORLP00000015051	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.639
ELOB	LOC101170466	ENSORLP00000034412	ENSORLP00000040912	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.569
ELOB	RAD23B	ENSORLP00000034412	ENSORLP00000007067	Ubiquitin-like domain-containing protein.	RAD23 homolog B, nucleotide excision repair protein.	0.513
ELOB	rad23a	ENSORLP00000034412	ENSORLP00000031881	Ubiquitin-like domain-containing protein.	RAD23 homolog A, nucleotide excision repair protein a.	0.513
ELOB	rps27a	ENSORLP00000034412	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.728
ELOB	uba52	ENSORLP00000034412	ENSORLP00000010731	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.639
ELOB	ubc	ENSORLP00000034412	ENSORLP00000015065	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.745
ELOB	ubl4a	ENSORLP00000034412	ENSORLP00000013888	Ubiquitin-like domain-containing protein.	Ubiquitin like 4A.	0.569
ELOB	ubl7	ENSORLP00000034412	ENSORLP00000034329	Ubiquitin-like domain-containing protein.	Ubiquitin-like 7b (bone marrow stromal cell-derived).	0.529
ELOB	ublcp1	ENSORLP00000034412	ENSORLP00000037035	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain containing CTD phosphatase 1.	0.410
ELOB	ubqln4	ENSORLP00000034412	ENSORLP00000042103	Ubiquitin-like domain-containing protein.	Ubiquilin 4.	0.513
ELOB	zfand4	ENSORLP00000034412	ENSORLP00000009398	Ubiquitin-like domain-containing protein.	Zinc finger, AN1-type domain 4.	0.569
ENSORLP00000027520	ELOB	ENSORLP00000027520	ENSORLP00000034412	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.938
ENSORLP00000027520	ENSORLP00000031114	ENSORLP00000027520	ENSORLP00000031114	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.552