(22 nodes) Sec7 domain network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101174779	Uncharacterized protein. (395 aa)
	LOC101158948	Uncharacterized protein. (394 aa)
	gbf1	Golgi brefeldin A resistant guanine nucleotide exchange factor 1. (1871 aa)
	LOC101170762	Cytohesin 1a. (418 aa)
	LOC101171613	Cytohesin 1b. (420 aa)
	fbxo8	F-box protein 8. (320 aa)
	LOC101166656	Uncharacterized protein. (1658 aa)
	arfgef1	ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited). (1920 aa)
	iqsec2	IQ motif and Sec7 domain 2b. (1419 aa)
	iqsec1	IQ motif and Sec7 domain 1b. (1240 aa)
	cyth2	Cytohesin 2. (416 aa)
	iqsec3	IQ motif and Sec7 domain 3a. (1300 aa)
	LOC101163792	Cytohesin 4b. (392 aa)
	psd2	Pleckstrin and Sec7 domain containing 2. (876 aa)
	LOC101163571	IQ motif and Sec7 domain 3b. (1121 aa)
	LOC101175010	Uncharacterized protein. (645 aa)
	arfgef3	ARFGEF family member 3. (2276 aa)
	arfgef2	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited). (1836 aa)
	LOC101161155	Cytohesin 4a. (387 aa)
	LOC101166035	SEC7 domain-containing protein. (1755 aa)
	IQSEC1	IQ motif and Sec7 domain 1. (1239 aa)
	LOC101166258	Uncharacterized protein. (1583 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
arfgef1	gbf1	ENSORLP00000038009	ENSORLP00000029765	ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited).	Golgi brefeldin A resistant guanine nucleotide exchange factor 1.	0.609
arfgef2	gbf1	ENSORLP00000002314	ENSORLP00000029765	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited).	Golgi brefeldin A resistant guanine nucleotide exchange factor 1.	0.609
fbxo8	gbf1	ENSORLP00000035105	ENSORLP00000029765	F-box protein 8.	Golgi brefeldin A resistant guanine nucleotide exchange factor 1.	0.580
gbf1	arfgef1	ENSORLP00000029765	ENSORLP00000038009	Golgi brefeldin A resistant guanine nucleotide exchange factor 1.	ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited).	0.609
gbf1	arfgef2	ENSORLP00000029765	ENSORLP00000002314	Golgi brefeldin A resistant guanine nucleotide exchange factor 1.	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited).	0.609
gbf1	fbxo8	ENSORLP00000029765	ENSORLP00000035105	Golgi brefeldin A resistant guanine nucleotide exchange factor 1.	F-box protein 8.	0.580