(16 nodes) CAP Gly-rich domain network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101166919	Dynactin 1b. (1259 aa)
	LOC101168449	Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family. (769 aa)
	clip4	Uncharacterized protein. (700 aa)
	kif13a	Kinesin family member 13A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1957 aa)
	clip3	CAP-GLY domain containing linker protein 3. (634 aa)
	clip2	CAP-GLY domain containing linker protein 2. (970 aa)
	LOC101162870	Dynactin 1a. (1440 aa)
	tbce	Tubulin folding cofactor E. (520 aa)
	H2L7L6_ORYLA	Uncharacterized protein. (298 aa)
	tbcb	Tubulin folding cofactor B. (246 aa)
	cyld	Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family. (918 aa)
	LOC101163809	Cylindromatosis (turban tumor syndrome), b. (707 aa)
	LOC101161139	Kinesin family member 13Ba; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1794 aa)
	LOC101167576	Uncharacterized protein. (943 aa)
	ENSORLP00000037521	Centrosomal protein 350. (2438 aa)
	clip1	CAP-GLY domain containing linker protein 1a. (2225 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000037521	LOC101163809	ENSORLP00000037521	ENSORLP00000017400	Centrosomal protein 350.	Cylindromatosis (turban tumor syndrome), b.	0.490
ENSORLP00000037521	LOC101167576	ENSORLP00000037521	ENSORLP00000038710	Centrosomal protein 350.	Uncharacterized protein.	0.477
ENSORLP00000037521	LOC101168449	ENSORLP00000037521	ENSORLP00000036637	Centrosomal protein 350.	Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family.	0.490
ENSORLP00000037521	cyld	ENSORLP00000037521	ENSORLP00000017385	Centrosomal protein 350.	Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family.	0.490
H2L7L6_ORYLA	LOC101162870	ENSORLP00000001832	ENSORLP00000031330	Uncharacterized protein.	Dynactin 1a.	0.627
H2L7L6_ORYLA	LOC101166919	ENSORLP00000001832	ENSORLP00000037337	Uncharacterized protein.	Dynactin 1b.	0.627
LOC101161139	kif13a	ENSORLP00000018184	ENSORLP00000026101	Kinesin family member 13Ba; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin family member 13A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.551
LOC101162870	H2L7L6_ORYLA	ENSORLP00000031330	ENSORLP00000001832	Dynactin 1a.	Uncharacterized protein.	0.627
LOC101162870	clip1	ENSORLP00000031330	ENSORLP00000036679	Dynactin 1a.	CAP-GLY domain containing linker protein 1a.	0.759
LOC101162870	clip2	ENSORLP00000031330	ENSORLP00000028851	Dynactin 1a.	CAP-GLY domain containing linker protein 2.	0.627
LOC101163809	ENSORLP00000037521	ENSORLP00000017400	ENSORLP00000037521	Cylindromatosis (turban tumor syndrome), b.	Centrosomal protein 350.	0.490
LOC101163809	clip3	ENSORLP00000017400	ENSORLP00000026269	Cylindromatosis (turban tumor syndrome), b.	CAP-GLY domain containing linker protein 3.	0.552
LOC101163809	clip4	ENSORLP00000017400	ENSORLP00000022853	Cylindromatosis (turban tumor syndrome), b.	Uncharacterized protein.	0.552
LOC101166919	H2L7L6_ORYLA	ENSORLP00000037337	ENSORLP00000001832	Dynactin 1b.	Uncharacterized protein.	0.627
LOC101166919	clip1	ENSORLP00000037337	ENSORLP00000036679	Dynactin 1b.	CAP-GLY domain containing linker protein 1a.	0.759
LOC101166919	clip2	ENSORLP00000037337	ENSORLP00000028851	Dynactin 1b.	CAP-GLY domain containing linker protein 2.	0.627
LOC101167576	ENSORLP00000037521	ENSORLP00000038710	ENSORLP00000037521	Uncharacterized protein.	Centrosomal protein 350.	0.477
LOC101167576	clip3	ENSORLP00000038710	ENSORLP00000026269	Uncharacterized protein.	CAP-GLY domain containing linker protein 3.	0.534
LOC101167576	clip4	ENSORLP00000038710	ENSORLP00000022853	Uncharacterized protein.	Uncharacterized protein.	0.534
LOC101168449	ENSORLP00000037521	ENSORLP00000036637	ENSORLP00000037521	Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family.	Centrosomal protein 350.	0.490