15 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rcor2	REST corepressor 2. (538 aa)
	mier3	Mesoderm induction early response 1, family member 3 b. (546 aa)
	LOC105356389	Uncharacterized protein. (1013 aa)
	LOC105355612	Uncharacterized protein. (762 aa)
	mta3	Metastasis associated 1 family, member 3. (702 aa)
	mier1	Mesoderm induction early response 1b, transcriptional regulator. (513 aa)
	mta1	Metastasis associated 1. (680 aa)
	LOC101157990	ELM2 and Myb/SANT-like domain containing 1a. (1027 aa)
	LOC101173423	ELM2 and Myb/SANT-like domain containing 1b. (1123 aa)
	mta2	Metastasis associated 1 family, member 2. (668 aa)
	LOC101156729	Mesoderm induction early response 1, family member 2. (471 aa)
	rcor1	REST corepressor 1. (434 aa)
	rcor3	REST corepressor 3. (606 aa)
	LOC101175558	Arginine-glutamic acid dipeptide (RE) repeats b. (1066 aa)
	rere	Arginine-glutamic acid dipeptide (RE) repeats a. (1537 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101157990	LOC105355612	ENSORLP00000042886	ENSORLP00000027362	ELM2 and Myb/SANT-like domain containing 1a.	Uncharacterized protein.	0.511
LOC101157990	LOC105356389	ENSORLP00000042886	ENSORLP00000035144	ELM2 and Myb/SANT-like domain containing 1a.	Uncharacterized protein.	0.419
LOC101173423	LOC105355612	ENSORLP00000014019	ENSORLP00000027362	ELM2 and Myb/SANT-like domain containing 1b.	Uncharacterized protein.	0.511
LOC101173423	LOC105356389	ENSORLP00000014019	ENSORLP00000035144	ELM2 and Myb/SANT-like domain containing 1b.	Uncharacterized protein.	0.419
LOC105355612	LOC101157990	ENSORLP00000027362	ENSORLP00000042886	Uncharacterized protein.	ELM2 and Myb/SANT-like domain containing 1a.	0.511
LOC105355612	LOC101173423	ENSORLP00000027362	ENSORLP00000014019	Uncharacterized protein.	ELM2 and Myb/SANT-like domain containing 1b.	0.511
LOC105356389	LOC101157990	ENSORLP00000035144	ENSORLP00000042886	Uncharacterized protein.	ELM2 and Myb/SANT-like domain containing 1a.	0.419
LOC105356389	LOC101173423	ENSORLP00000035144	ENSORLP00000014019	Uncharacterized protein.	ELM2 and Myb/SANT-like domain containing 1b.	0.419
mta1	mta2	ENSORLP00000013956	ENSORLP00000014788	Metastasis associated 1.	Metastasis associated 1 family, member 2.	0.577
mta1	mta3	ENSORLP00000013956	ENSORLP00000012906	Metastasis associated 1.	Metastasis associated 1 family, member 3.	0.575
mta1	rcor1	ENSORLP00000013956	ENSORLP00000024245	Metastasis associated 1.	REST corepressor 1.	0.434
mta1	rcor2	ENSORLP00000013956	ENSORLP00000007120	Metastasis associated 1.	REST corepressor 2.	0.434
mta1	rcor3	ENSORLP00000013956	ENSORLP00000001380	Metastasis associated 1.	REST corepressor 3.	0.434
mta2	mta1	ENSORLP00000014788	ENSORLP00000013956	Metastasis associated 1 family, member 2.	Metastasis associated 1.	0.577
mta2	mta3	ENSORLP00000014788	ENSORLP00000012906	Metastasis associated 1 family, member 2.	Metastasis associated 1 family, member 3.	0.574
mta2	rcor1	ENSORLP00000014788	ENSORLP00000024245	Metastasis associated 1 family, member 2.	REST corepressor 1.	0.434
mta2	rcor2	ENSORLP00000014788	ENSORLP00000007120	Metastasis associated 1 family, member 2.	REST corepressor 2.	0.434
mta2	rcor3	ENSORLP00000014788	ENSORLP00000001380	Metastasis associated 1 family, member 2.	REST corepressor 3.	0.434
mta3	mta1	ENSORLP00000012906	ENSORLP00000013956	Metastasis associated 1 family, member 3.	Metastasis associated 1.	0.575
mta3	mta2	ENSORLP00000012906	ENSORLP00000014788	Metastasis associated 1 family, member 3.	Metastasis associated 1 family, member 2.	0.574