47 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rcor3	REST corepressor 3. (606 aa)
	LOC101175558	Arginine-glutamic acid dipeptide (RE) repeats b. (1066 aa)
	zzz3	Zinc finger, ZZ-type containing 3. (1044 aa)
	LOC101172332	Uncharacterized protein. (871 aa)
	rere	Arginine-glutamic acid dipeptide (RE) repeats a. (1537 aa)
	rcor2	REST corepressor 2. (538 aa)
	mybl1	V-myb avian myeloblastosis viral oncogene homolog-like 1. (789 aa)
	mta3	Metastasis associated 1 family, member 3. (702 aa)
	snapc2	Uncharacterized protein. (506 aa)
	mier1	Mesoderm induction early response 1b, transcriptional regulator. (513 aa)
	mta1	Metastasis associated 1. (680 aa)
	LOC101173423	ELM2 and Myb/SANT-like domain containing 1b. (1123 aa)
	mybl2	V-myb avian myeloblastosis viral oncogene homolog-like 2b. (629 aa)
	terf2	HTH myb-type domain-containing protein. (627 aa)
	mta2	Metastasis associated 1 family, member 2. (668 aa)
	ncor1	Nuclear receptor corepressor 1. (2380 aa)
	LOC101170809	Uncharacterized protein. (1282 aa)
	ep400	E1A binding protein p400. (2905 aa)
	ncor2	Nuclear receptor corepressor 2. (2180 aa)
	smarcc1	Uncharacterized protein. (1154 aa)
	ttf1	Si:ch73-376l24.4. (610 aa)
	myb	Uncharacterized protein. (592 aa)
	LOC101156729	Mesoderm induction early response 1, family member 2. (471 aa)
	Dmtf1	Cyclin D binding myb-like transcription factor 1. (348 aa)
	dnajc2	DnaJ (Hsp40) homolog, subfamily C, member 2. (523 aa)
	cdc5l	CDC5 cell division cycle 5-like (S. pombe). (812 aa)
	rcor1	REST corepressor 1. (434 aa)
	c14h17orf49	Zgc:103508. (266 aa)
	mis18bp1	SANT domain-containing protein. (1044 aa)
	LOC101164905	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b. (949 aa)
	LOC105355612	Uncharacterized protein. (762 aa)
	kiaa1841	Si:ch211-189k9.2. (890 aa)
	ezh2	Uncharacterized protein. (775 aa)
	LOC105356389	Uncharacterized protein. (1013 aa)
	terf1	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat. (454 aa)
	LOC101164986	Si:dkey-27c15.3. (1313 aa)
	LOC101173800	Myb_DNA-bind_7 domain-containing protein. (2715 aa)
	smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1039 aa)
	ezh1	Uncharacterized protein. (807 aa)
	mier3	Mesoderm induction early response 1, family member 3 b. (546 aa)
	cramp1	Cramped chromatin regulator homolog 1. (1161 aa)
	LOC101157990	ELM2 and Myb/SANT-like domain containing 1a. (1027 aa)
	tada2a	Transcriptional adapter. (445 aa)
	LOC101171195	Uncharacterized protein. (520 aa)
	dnajc1	DnaJ (Hsp40) homolog, subfamily C, member 1. (505 aa)
	tada2b	Transcriptional adapter. (513 aa)
	snapc4	Small nuclear RNA activating complex, polypeptide 4. (1512 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101157990	LOC105355612	ENSORLP00000042886	ENSORLP00000027362	ELM2 and Myb/SANT-like domain containing 1a.	Uncharacterized protein.	0.511
LOC101157990	LOC105356389	ENSORLP00000042886	ENSORLP00000035144	ELM2 and Myb/SANT-like domain containing 1a.	Uncharacterized protein.	0.419
LOC101164905	smarca5	ENSORLP00000027232	ENSORLP00000036038	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.647
LOC101164905	smarcc1	ENSORLP00000027232	ENSORLP00000019895	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b.	Uncharacterized protein.	0.550
LOC101164986	cramp1	ENSORLP00000035387	ENSORLP00000039514	Si:dkey-27c15.3.	Cramped chromatin regulator homolog 1.	0.477
LOC101170809	LOC105356389	ENSORLP00000017008	ENSORLP00000035144	Uncharacterized protein.	Uncharacterized protein.	0.529
LOC101170809	terf1	ENSORLP00000017008	ENSORLP00000035250	Uncharacterized protein.	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	0.656
LOC101170809	terf2	ENSORLP00000017008	ENSORLP00000014714	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.587
LOC101173423	LOC105355612	ENSORLP00000014019	ENSORLP00000027362	ELM2 and Myb/SANT-like domain containing 1b.	Uncharacterized protein.	0.511
LOC101173423	LOC105356389	ENSORLP00000014019	ENSORLP00000035144	ELM2 and Myb/SANT-like domain containing 1b.	Uncharacterized protein.	0.419
LOC101173800	snapc2	ENSORLP00000035815	ENSORLP00000013000	Myb_DNA-bind_7 domain-containing protein.	Uncharacterized protein.	0.536
LOC101173800	snapc4	ENSORLP00000035815	ENSORLP00000045461	Myb_DNA-bind_7 domain-containing protein.	Small nuclear RNA activating complex, polypeptide 4.	0.713
LOC105355612	LOC101157990	ENSORLP00000027362	ENSORLP00000042886	Uncharacterized protein.	ELM2 and Myb/SANT-like domain containing 1a.	0.511
LOC105355612	LOC101173423	ENSORLP00000027362	ENSORLP00000014019	Uncharacterized protein.	ELM2 and Myb/SANT-like domain containing 1b.	0.511
LOC105356389	LOC101157990	ENSORLP00000035144	ENSORLP00000042886	Uncharacterized protein.	ELM2 and Myb/SANT-like domain containing 1a.	0.419
LOC105356389	LOC101170809	ENSORLP00000035144	ENSORLP00000017008	Uncharacterized protein.	Uncharacterized protein.	0.529
LOC105356389	LOC101173423	ENSORLP00000035144	ENSORLP00000014019	Uncharacterized protein.	ELM2 and Myb/SANT-like domain containing 1b.	0.419
cdc5l	dnajc2	ENSORLP00000023227	ENSORLP00000023087	CDC5 cell division cycle 5-like (S. pombe).	DnaJ (Hsp40) homolog, subfamily C, member 2.	0.425
cdc5l	zzz3	ENSORLP00000023227	ENSORLP00000004155	CDC5 cell division cycle 5-like (S. pombe).	Zinc finger, ZZ-type containing 3.	0.570
cramp1	LOC101164986	ENSORLP00000039514	ENSORLP00000035387	Cramped chromatin regulator homolog 1.	Si:dkey-27c15.3.	0.477