(46 nodes) VWFC domain network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101166604	Uncharacterized protein. (383 aa)
	nell2	Neural EGFL like 2a. (824 aa)
	ccn4	Cellular communication network factor 4a. (361 aa)
	sspo	Subcommissural organ spondin. (4429 aa)
	H2LI48_ORYLA	Uncharacterized protein. (1724 aa)
	col2a1a	Type II collagen A isoform 1. (1491 aa)
	LOC105358719	Uncharacterized protein. (1897 aa)
	H2LNA1_ORYLA	Uncharacterized protein. (439 aa)
	H2LNI0_ORYLA	Uncharacterized protein. (562 aa)
	FCGBP	Si:dkey-65b12.6. (2557 aa)
	chrdl2	Chordin-like 2. (445 aa)
	dgcr2	DiGeorge syndrome critical region gene 2. (527 aa)
	vwf	Von Willebrand factor. (2849 aa)
	H2LZU3_ORYLA	Uncharacterized protein. (588 aa)
	chrd	Chordin; Belongs to the chordin family. (946 aa)
	LOC101162078	Zonadhesin, like. (3966 aa)
	thbs2	Thrombospondin 2a. (1203 aa)
	ccn1	Cellular communication network factor 1. (376 aa)
	LOC101162163	Collagen, type I, alpha 1b. (1286 aa)
	jag1	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1219 aa)
	LOC100529192	Collagen, type II, alpha 1a. (1489 aa)
	tecta	Tectorin alpha. (2120 aa)
	bmper	BMP binding endothelial regulator. (683 aa)
	ccn5	Cellular communication network factor 5. (352 aa)
	thbs1	Uncharacterized protein. (1172 aa)
	col1	Uncharacterized protein. (1446 aa)
	LOC100302438	Thrombospondin 1b. (1186 aa)
	pxdn	Peroxidasin. (1481 aa)
	LOC101163046	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1251 aa)
	ccn2	Cellular communication network factor 2a. (346 aa)
	otog	Otogelin. (2928 aa)
	LOC111947818	Si:ch211-106h11.3. (420 aa)
	vwc2	Von Willebrand factor C domain containing 2. (347 aa)
	vwc2l	Von Willebrand factor C domain containing 2 like. (238 aa)
	LOC101157398	Uncharacterized protein. (2459 aa)
	LOC101171630	Si:dkey-283b1.7. (239 aa)
	LOC101169088	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1233 aa)
	Muc2	Uncharacterized protein. (2877 aa)
	crim1	Uncharacterized protein. (931 aa)
	ENSORLP00000038034	Uncharacterized protein. (309 aa)
	NELL1	Neural EGFL like 1. (876 aa)
	CCN3	Cellular communication network factor 3. (366 aa)
	ENSORLP00000039882	Uncharacterized protein. (2172 aa)
	LOC101158638	Zgc:113531. (231 aa)
	ENSORLP00000043175	Uncharacterized protein. (3460 aa)
	ENSORLP00000043629	Uncharacterized protein. (618 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000043175	H2LNA1_ORYLA	ENSORLP00000043175	ENSORLP00000007528	Uncharacterized protein.	Uncharacterized protein.	0.686
ENSORLP00000043629	H2LNI0_ORYLA	ENSORLP00000043629	ENSORLP00000007607	Uncharacterized protein.	Uncharacterized protein.	0.445
H2LNA1_ORYLA	ENSORLP00000043175	ENSORLP00000007528	ENSORLP00000043175	Uncharacterized protein.	Uncharacterized protein.	0.686
H2LNA1_ORYLA	H2LNI0_ORYLA	ENSORLP00000007528	ENSORLP00000007607	Uncharacterized protein.	Uncharacterized protein.	0.885
H2LNA1_ORYLA	Muc2	ENSORLP00000007528	ENSORLP00000036256	Uncharacterized protein.	Uncharacterized protein.	0.766
H2LNI0_ORYLA	ENSORLP00000043629	ENSORLP00000007607	ENSORLP00000043629	Uncharacterized protein.	Uncharacterized protein.	0.445
H2LNI0_ORYLA	H2LNA1_ORYLA	ENSORLP00000007607	ENSORLP00000007528	Uncharacterized protein.	Uncharacterized protein.	0.885
LOC100302438	thbs1	ENSORLP00000022311	ENSORLP00000021092	Thrombospondin 1b.	Uncharacterized protein.	0.900
LOC101158638	LOC101171630	ENSORLP00000042140	ENSORLP00000030791	Zgc:113531.	Si:dkey-283b1.7.	0.540
LOC101158638	vwc2	ENSORLP00000042140	ENSORLP00000027383	Zgc:113531.	Von Willebrand factor C domain containing 2.	0.540
LOC101158638	vwc2l	ENSORLP00000042140	ENSORLP00000027460	Zgc:113531.	Von Willebrand factor C domain containing 2 like.	0.540
LOC101169088	jag1	ENSORLP00000032540	ENSORLP00000015240	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.901
LOC101171630	LOC101158638	ENSORLP00000030791	ENSORLP00000042140	Si:dkey-283b1.7.	Zgc:113531.	0.540
LOC101171630	vwc2	ENSORLP00000030791	ENSORLP00000027383	Si:dkey-283b1.7.	Von Willebrand factor C domain containing 2.	0.552
LOC101171630	vwc2l	ENSORLP00000030791	ENSORLP00000027460	Si:dkey-283b1.7.	Von Willebrand factor C domain containing 2 like.	0.540
Muc2	H2LNA1_ORYLA	ENSORLP00000036256	ENSORLP00000007528	Uncharacterized protein.	Uncharacterized protein.	0.766
bmper	chrd	ENSORLP00000019392	ENSORLP00000011912	BMP binding endothelial regulator.	Chordin; Belongs to the chordin family.	0.675
chrd	bmper	ENSORLP00000011912	ENSORLP00000019392	Chordin; Belongs to the chordin family.	BMP binding endothelial regulator.	0.675
chrd	vwc2	ENSORLP00000011912	ENSORLP00000027383	Chordin; Belongs to the chordin family.	Von Willebrand factor C domain containing 2.	0.481
chrd	vwf	ENSORLP00000011912	ENSORLP00000010893	Chordin; Belongs to the chordin family.	Von Willebrand factor.	0.407