STRINGSTRING
hmg20b hmg20b hbp1 hbp1 LOC101156596 LOC101156596 LOC101165167 LOC101165167 SMARCE1 SMARCE1 sox13 sox13 pbrm1 pbrm1 sox6a sox6a sox2 sox2 H2LJV9_ORYLA H2LJV9_ORYLA ccdc124 ccdc124 sox6b sox6b lef1 lef1 tox4 tox4 tox3 tox3 LOC101162736 LOC101162736 tox2 tox2 LOC101159471 LOC101159471 LOC101170586 LOC101170586 tcf7l2 tcf7l2 LOC101156834 LOC101156834 LOC111949029 LOC111949029 LOC111949113 LOC111949113 hmg20a hmg20a sox9 sox9 sox8 sox8 LOC100304457 LOC100304457 sox17 sox17 Sox2 Sox2 tcf7l1 tcf7l1 sox18 sox18 tcf7 tcf7 hmgxb3 hmgxb3 tfam tfam LOC110013551 LOC110013551 sox10 sox10 ssrp1 ssrp1 sox5 sox5 cic cic LOC110017107 LOC110017107 LOC111948314 LOC111948314 ENSORLP00000030178 ENSORLP00000030178 wdhd1 wdhd1 LOC111949309 LOC111949309 ENSORLP00000028540 ENSORLP00000028540 sox7 sox7 bbx bbx sox14 sox14 H2MWV0_ORYLA H2MWV0_ORYLA LOC101174813 LOC101174813 LOC101157589 LOC101157589 sox21 sox21 H2MLV9_ORYLA H2MLV9_ORYLA hmgxb4 hmgxb4 ubtf ubtf pms1 pms1 sox11 sox11 tox tox sox1 sox1 LOC101162479 LOC101162479
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hmg20bHigh mobility group 20B. (292 aa)
hbp1HMG-box transcription factor 1. (451 aa)
LOC101156596High mobility group box 1b. (194 aa)
LOC101165167High mobility group box 1a. (206 aa)
SMARCE1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1. (427 aa)
sox13SRY-box transcription factor 13. (588 aa)
pbrm1Polybromo 1. (1228 aa)
sox6aHMG box domain-containing protein. (814 aa)
sox2SOX3 protein. (300 aa)
H2LJV9_ORYLATranscription factor SOX. (310 aa)
ccdc124Coiled-coil domain containing 124. (220 aa)
sox6bSRY-box containing gene 6b. (804 aa)
lef1Lymphoid enhancer-binding factor 1. (379 aa)
tox4TOX high mobility group box family member 4 b. (666 aa)
tox3TOX high mobility group box family member 3. (602 aa)
LOC101162736Sox10a. (498 aa)
tox2TOX high mobility group box family member 2. (567 aa)
LOC101159471Uncharacterized protein. (486 aa)
LOC101170586HMG box domain-containing protein. (471 aa)
tcf7l2Transcription factor 7 like 2. (667 aa)
LOC101156834Capicua transcriptional repressor a. (2478 aa)
LOC111949029HMG box domain-containing protein. (224 aa)
LOC111949113Upstream binding transcription factor, like. (708 aa)
hmg20aHigh mobility group 20A. (320 aa)
sox9HMG box domain-containing protein. (476 aa)
sox8SRY-box containing gene 8. (465 aa)
LOC100304457SRY-box transcription factor 32. (300 aa)
sox17SRY-box containing gene 17. (398 aa)
Sox2SRY-box transcription factor 2. (243 aa)
tcf7l1HMG box domain-containing protein. (574 aa)
sox18Uncharacterized protein. (585 aa)
tcf7Transcription factor 7. (536 aa)
hmgxb3HMG box domain containing 3. (1201 aa)
tfamTranscription factor A, mitochondrial. (304 aa)
LOC110013551Transcription factor SOX. (360 aa)
sox10SRY-box containing gene 10b. (484 aa)
ssrp1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (705 aa)
sox5HMG box domain-containing protein. (880 aa)
cicCapicua transcriptional repressor b. (2702 aa)
LOC110017107SRY-box transcription factor 19b. (302 aa)
LOC111948314HMG box domain-containing protein. (548 aa)
ENSORLP00000030178Uncharacterized protein. (1506 aa)
wdhd1WD repeat and HMG-box DNA binding protein 1. (1266 aa)
LOC111949309HMG box domain-containing protein. (338 aa)
ENSORLP00000028540Uncharacterized protein. (332 aa)
sox7Uncharacterized protein. (407 aa)
bbxBBX high mobility group box domain containing. (815 aa)
sox14SRY-box containing gene 14. (238 aa)
H2MWV0_ORYLAUncharacterized protein. (406 aa)
LOC101174813SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1. (384 aa)
LOC101157589High mobility group box 2a. (214 aa)
sox21SRY-box containing gene 21. (244 aa)
H2MLV9_ORYLAHMG box domain-containing protein. (205 aa)
hmgxb4HMG box domain containing 4a. (577 aa)
ubtfUpstream binding transcription factor. (741 aa)
pms1PMS1 homolog 1, mismatch repair system component. (991 aa)
sox11Transcription factor SOX. (359 aa)
toxThymocyte selection-associated high mobility group box. (602 aa)
sox1HMG box domain-containing protein. (322 aa)
LOC101162479TOX high mobility group box family member 4 a. (627 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.