(11 nodes) VIT domain network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	itih3	Inter-alpha-trypsin inhibitor heavy chain 1. (910 aa)
	LOC105355516	VIT domain-containing protein. (730 aa)
	LOC101161821	Uncharacterized protein. (742 aa)
	VWA5B1	Von Willebrand factor A domain containing 5B1. (1271 aa)
	Itih6	Inter-alpha-trypsin inhibitor heavy chain family member 6. (807 aa)
	itih5	Inter-alpha-trypsin inhibitor heavy chain 5. (915 aa)
	itih2	Inter-alpha-trypsin inhibitor heavy chain 2. (947 aa)
	H2MVB5_ORYLA	Poly [ADP-ribose] polymerase. (1053 aa)
	LOC101174937	Uncharacterized protein. (794 aa)
	ENSORLP00000037653	Uncharacterized protein. (726 aa)
	LOC101156200	Von Willebrand factor A domain containing 5B2. (1400 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Itih6	itih2	ENSORLP00000020381	ENSORLP00000021465	Inter-alpha-trypsin inhibitor heavy chain family member 6.	Inter-alpha-trypsin inhibitor heavy chain 2.	0.692
Itih6	itih3	ENSORLP00000020381	ENSORLP00000009718	Inter-alpha-trypsin inhibitor heavy chain family member 6.	Inter-alpha-trypsin inhibitor heavy chain 1.	0.694
Itih6	itih5	ENSORLP00000020381	ENSORLP00000021195	Inter-alpha-trypsin inhibitor heavy chain family member 6.	Inter-alpha-trypsin inhibitor heavy chain 5.	0.684
itih2	Itih6	ENSORLP00000021465	ENSORLP00000020381	Inter-alpha-trypsin inhibitor heavy chain 2.	Inter-alpha-trypsin inhibitor heavy chain family member 6.	0.692
itih3	Itih6	ENSORLP00000009718	ENSORLP00000020381	Inter-alpha-trypsin inhibitor heavy chain 1.	Inter-alpha-trypsin inhibitor heavy chain family member 6.	0.694
itih5	Itih6	ENSORLP00000021195	ENSORLP00000020381	Inter-alpha-trypsin inhibitor heavy chain 5.	Inter-alpha-trypsin inhibitor heavy chain family member 6.	0.684