(7 nodes) Protein Unc-13 network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101159330	Unc-13 homolog Ba (C. elegans). (1200 aa)
	unc13a	Uncharacterized protein. (1484 aa)
	UNC13C	Unc-13 homolog C. (1122 aa)
	UNC13A	Unc-13 homolog A. (1876 aa)
	UNC13B	Unc-13 homolog B. (1474 aa)
	LOC101159330-2	Uncharacterized protein. (293 aa)
	UNC13C-2	Uncharacterized protein. (1427 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101159330	LOC101159330-2	ENSORLP00000024596	ENSORLP00000041319	Unc-13 homolog Ba (C. elegans).	Uncharacterized protein.	0.786
LOC101159330	UNC13C-2	ENSORLP00000024596	ENSORLP00000042042	Unc-13 homolog Ba (C. elegans).	Uncharacterized protein.	0.887
LOC101159330-2	LOC101159330	ENSORLP00000041319	ENSORLP00000024596	Uncharacterized protein.	Unc-13 homolog Ba (C. elegans).	0.786
LOC101159330-2	UNC13C	ENSORLP00000041319	ENSORLP00000016252	Uncharacterized protein.	Unc-13 homolog C.	0.540
UNC13C	LOC101159330-2	ENSORLP00000016252	ENSORLP00000041319	Unc-13 homolog C.	Uncharacterized protein.	0.540
UNC13C	UNC13C-2	ENSORLP00000016252	ENSORLP00000042042	Unc-13 homolog C.	Uncharacterized protein.	0.896
UNC13C-2	LOC101159330	ENSORLP00000042042	ENSORLP00000024596	Uncharacterized protein.	Unc-13 homolog Ba (C. elegans).	0.887
UNC13C-2	UNC13C	ENSORLP00000042042	ENSORLP00000016252	Uncharacterized protein.	Unc-13 homolog C.	0.896