STRINGSTRING
LOC101163425 LOC101163425 LOC101164402 LOC101164402 scfd1 scfd1 vps33a vps33a LOC101159753 LOC101159753 vps45 vps45 scfd2 scfd2 vps33b vps33b stxbp3 stxbp3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC101163425Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family. (603 aa)
LOC101164402Syntaxin binding protein 2; Belongs to the STXBP/unc-18/SEC1 family. (615 aa)
scfd1Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family. (631 aa)
vps33aVPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family. (600 aa)
LOC101159753Syntaxin binding protein 1b; Belongs to the STXBP/unc-18/SEC1 family. (603 aa)
vps45Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family. (570 aa)
scfd2Sec1 family domain containing 2; Belongs to the STXBP/unc-18/SEC1 family. (722 aa)
vps33bVPS33B late endosome and lysosome associated; Belongs to the STXBP/unc-18/SEC1 family. (611 aa)
stxbp3Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (598 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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