5 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ramp1	Receptor activity modifying protein 1. (186 aa)
	LOC101156047	Uncharacterized protein. (165 aa)
	ramp2	Receptor (G protein-coupled) activity modifying protein 2. (225 aa)
	LOC101155470	Uncharacterized protein. (210 aa)
	LOC101165131	Uncharacterized protein. (149 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101155470	LOC101156047	ENSORLP00000042859	ENSORLP00000038587	Uncharacterized protein.	Uncharacterized protein.	0.973
LOC101155470	LOC101165131	ENSORLP00000042859	ENSORLP00000041960	Uncharacterized protein.	Uncharacterized protein.	0.951
LOC101155470	ramp1	ENSORLP00000042859	ENSORLP00000022680	Uncharacterized protein.	Receptor activity modifying protein 1.	0.951
LOC101155470	ramp2	ENSORLP00000042859	ENSORLP00000041600	Uncharacterized protein.	Receptor (G protein-coupled) activity modifying protein 2.	0.900
LOC101156047	LOC101155470	ENSORLP00000038587	ENSORLP00000042859	Uncharacterized protein.	Uncharacterized protein.	0.973
LOC101156047	LOC101165131	ENSORLP00000038587	ENSORLP00000041960	Uncharacterized protein.	Uncharacterized protein.	0.949
LOC101156047	ramp1	ENSORLP00000038587	ENSORLP00000022680	Uncharacterized protein.	Receptor activity modifying protein 1.	0.956
LOC101156047	ramp2	ENSORLP00000038587	ENSORLP00000041600	Uncharacterized protein.	Receptor (G protein-coupled) activity modifying protein 2.	0.968
LOC101165131	LOC101155470	ENSORLP00000041960	ENSORLP00000042859	Uncharacterized protein.	Uncharacterized protein.	0.951
LOC101165131	LOC101156047	ENSORLP00000041960	ENSORLP00000038587	Uncharacterized protein.	Uncharacterized protein.	0.949
LOC101165131	ramp1	ENSORLP00000041960	ENSORLP00000022680	Uncharacterized protein.	Receptor activity modifying protein 1.	0.902
LOC101165131	ramp2	ENSORLP00000041960	ENSORLP00000041600	Uncharacterized protein.	Receptor (G protein-coupled) activity modifying protein 2.	0.947
ramp1	LOC101155470	ENSORLP00000022680	ENSORLP00000042859	Receptor activity modifying protein 1.	Uncharacterized protein.	0.951
ramp1	LOC101156047	ENSORLP00000022680	ENSORLP00000038587	Receptor activity modifying protein 1.	Uncharacterized protein.	0.956
ramp1	LOC101165131	ENSORLP00000022680	ENSORLP00000041960	Receptor activity modifying protein 1.	Uncharacterized protein.	0.902
ramp1	ramp2	ENSORLP00000022680	ENSORLP00000041600	Receptor activity modifying protein 1.	Receptor (G protein-coupled) activity modifying protein 2.	0.954
ramp2	LOC101155470	ENSORLP00000041600	ENSORLP00000042859	Receptor (G protein-coupled) activity modifying protein 2.	Uncharacterized protein.	0.900
ramp2	LOC101156047	ENSORLP00000041600	ENSORLP00000038587	Receptor (G protein-coupled) activity modifying protein 2.	Uncharacterized protein.	0.968
ramp2	LOC101165131	ENSORLP00000041600	ENSORLP00000041960	Receptor (G protein-coupled) activity modifying protein 2.	Uncharacterized protein.	0.947
ramp2	ramp1	ENSORLP00000041600	ENSORLP00000022680	Receptor (G protein-coupled) activity modifying protein 2.	Receptor activity modifying protein 1.	0.954