(9 nodes) Rim-like network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2L8K4_ORYLA	Regulating synaptic membrane exocytosis 1a. (870 aa)
	ENSORLP00000034554	C2 domain-containing protein. (288 aa)
	ENSORLP00000031636	C2 domain-containing protein. (317 aa)
	ENSORLP00000028044	PDZ domain-containing protein. (436 aa)
	ENSORLP00000026521	Uncharacterized protein. (877 aa)
	rims4	Regulating synaptic membrane exocytosis 4. (271 aa)
	LOC101174515	Regulating synaptic membrane exocytosis 3. (323 aa)
	H2LBE3_ORYLA	C2 domain-containing protein. (313 aa)
	RIMS2	Regulating synaptic membrane exocytosis 2. (1283 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000026521	ENSORLP00000031636	ENSORLP00000026521	ENSORLP00000031636	Uncharacterized protein.	C2 domain-containing protein.	0.909
ENSORLP00000026521	ENSORLP00000034554	ENSORLP00000026521	ENSORLP00000034554	Uncharacterized protein.	C2 domain-containing protein.	0.914
ENSORLP00000026521	H2LBE3_ORYLA	ENSORLP00000026521	ENSORLP00000003215	Uncharacterized protein.	C2 domain-containing protein.	0.909
ENSORLP00000026521	LOC101174515	ENSORLP00000026521	ENSORLP00000006562	Uncharacterized protein.	Regulating synaptic membrane exocytosis 3.	0.909
ENSORLP00000026521	rims4	ENSORLP00000026521	ENSORLP00000011935	Uncharacterized protein.	Regulating synaptic membrane exocytosis 4.	0.909
ENSORLP00000028044	ENSORLP00000031636	ENSORLP00000028044	ENSORLP00000031636	PDZ domain-containing protein.	C2 domain-containing protein.	0.899
ENSORLP00000028044	ENSORLP00000034554	ENSORLP00000028044	ENSORLP00000034554	PDZ domain-containing protein.	C2 domain-containing protein.	0.833
ENSORLP00000028044	H2LBE3_ORYLA	ENSORLP00000028044	ENSORLP00000003215	PDZ domain-containing protein.	C2 domain-containing protein.	0.744
ENSORLP00000028044	LOC101174515	ENSORLP00000028044	ENSORLP00000006562	PDZ domain-containing protein.	Regulating synaptic membrane exocytosis 3.	0.732
ENSORLP00000028044	rims4	ENSORLP00000028044	ENSORLP00000011935	PDZ domain-containing protein.	Regulating synaptic membrane exocytosis 4.	0.713
ENSORLP00000031636	ENSORLP00000026521	ENSORLP00000031636	ENSORLP00000026521	C2 domain-containing protein.	Uncharacterized protein.	0.909
ENSORLP00000031636	ENSORLP00000028044	ENSORLP00000031636	ENSORLP00000028044	C2 domain-containing protein.	PDZ domain-containing protein.	0.899
ENSORLP00000031636	H2L8K4_ORYLA	ENSORLP00000031636	ENSORLP00000002178	C2 domain-containing protein.	Regulating synaptic membrane exocytosis 1a.	0.899
ENSORLP00000034554	ENSORLP00000026521	ENSORLP00000034554	ENSORLP00000026521	C2 domain-containing protein.	Uncharacterized protein.	0.914
ENSORLP00000034554	ENSORLP00000028044	ENSORLP00000034554	ENSORLP00000028044	C2 domain-containing protein.	PDZ domain-containing protein.	0.833
ENSORLP00000034554	H2L8K4_ORYLA	ENSORLP00000034554	ENSORLP00000002178	C2 domain-containing protein.	Regulating synaptic membrane exocytosis 1a.	0.740
H2L8K4_ORYLA	ENSORLP00000031636	ENSORLP00000002178	ENSORLP00000031636	Regulating synaptic membrane exocytosis 1a.	C2 domain-containing protein.	0.899
H2L8K4_ORYLA	ENSORLP00000034554	ENSORLP00000002178	ENSORLP00000034554	Regulating synaptic membrane exocytosis 1a.	C2 domain-containing protein.	0.740
H2L8K4_ORYLA	H2LBE3_ORYLA	ENSORLP00000002178	ENSORLP00000003215	Regulating synaptic membrane exocytosis 1a.	C2 domain-containing protein.	0.899
H2L8K4_ORYLA	LOC101174515	ENSORLP00000002178	ENSORLP00000006562	Regulating synaptic membrane exocytosis 1a.	Regulating synaptic membrane exocytosis 3.	0.911