STRINGSTRING
rfc5 rfc5 ENSORLP00000033513 ENSORLP00000033513 pold4 pold4 rcbtb2 rcbtb2 rfc4 rfc4 rfc2 rfc2 pole4 pole4 LOC101161792 LOC101161792 pole3 pole3 cul4b cul4b ddb1 ddb1 pold3 pold3 meiob meiob RPA1 RPA1 rfc3 rfc3 LOC101154851 LOC101154851 rpa1 rpa1 LOC101165789 LOC101165789 rpa2 rpa2 H2MG95_ORYLA H2MG95_ORYLA pole2 pole2 pold2 pold2 dtl dtl ubc ubc H2M970_ORYLA H2M970_ORYLA RCBTB1 RCBTB1 wdr48 wdr48 pold1 pold1 kxd1 kxd1 usp1 usp1 LOC101166554 LOC101166554 uba52 uba52 POLE POLE ENSORLP00000044710 ENSORLP00000044710 rpa3 rpa3 LOC101172133 LOC101172133 rad18 rad18 rfc1 rfc1 rps27a rps27a pcna pcna
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rfc5Replication factor C (activator 1) 5. (335 aa)
ENSORLP00000033513DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (398 aa)
pold4Si:dkey-28b4.7. (108 aa)
rcbtb2Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
rfc4Replication factor C (activator 1) 4. (355 aa)
rfc2Replication factor C (activator 1) 2. (355 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (124 aa)
LOC101161792SCY domain-containing protein. (126 aa)
pole3CBFD_NFYB_HMF domain-containing protein. (148 aa)
cul4bCullin 4B; Belongs to the cullin family. (845 aa)
ddb1Damage-specific DNA binding protein 1. (1126 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (441 aa)
meiobMethionine sulfoxide reductase B1b. (462 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (655 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
LOC101154851Cullin 4A; Belongs to the cullin family. (612 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (598 aa)
LOC101165789Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (589 aa)
rpa2Replication protein A2. (280 aa)
H2MG95_ORYLARing-box 1, E3 ubiquitin protein ligase. (82 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (524 aa)
dtlDenticleless E3 ubiquitin protein ligase homolog (Drosophila). (646 aa)
ubcUbiquitin B. (782 aa)
H2M970_ORYLAUbiquitin-like domain-containing protein. (129 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
wdr48WD repeat domain 48b. (677 aa)
pold1DNA polymerase. (1107 aa)
kxd1KxDL motif containing 1. (184 aa)
usp1Ubiquitin carboxyl-terminal hydrolase. (785 aa)
LOC101166554ATPase family AAA domain containing 5a. (1758 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (1100 aa)
ENSORLP00000044710annotation not available (829 aa)
rpa3Replication protein A3. (122 aa)
LOC101172133ATPase family AAA domain containing 5b. (959 aa)
rad18RAD18 E3 ubiquitin protein ligase. (492 aa)
rfc1Replication factor C subunit 1. (1152 aa)
rps27aRibosomal protein S27a. (195 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (298 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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