STRINGSTRING
prim1 prim1 ppp2ca ppp2ca ppp4r1 ppp4r1 LOC101167061 LOC101167061 prim2 prim2 PPP2R3B PPP2R3B fnbp4 fnbp4 ppp2r3c ppp2r3c H2MVE2_ORYLA H2MVE2_ORYLA ppp2cb ppp2cb pola2 pola2 rb1 rb1 relch relch ppp2r3a ppp2r3a pola1 pola1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (426 aa)
ppp2caSerine/threonine-protein phosphatase. (309 aa)
ppp4r1WRNPLPNID domain-containing protein. (969 aa)
LOC101167061Protein phosphatase 2, regulatory subunit A, beta b. (589 aa)
prim2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (484 aa)
PPP2R3BProtein phosphatase 2 regulatory subunit B''beta. (581 aa)
fnbp4Formin binding protein 4. (843 aa)
ppp2r3cProtein phosphatase 2, regulatory subunit B'', gamma. (448 aa)
H2MVE2_ORYLAProtein phosphatase 4, regulatory subunit 4. (726 aa)
ppp2cbSerine/threonine-protein phosphatase. (309 aa)
pola2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (603 aa)
rb1Retinoblastoma 1. (916 aa)
relchRAB11 binding and LisH domain, coiled-coil and HEAT repeat containing. (1209 aa)
ppp2r3aProtein phosphatase 2, regulatory subunit B'', alpha. (1373 aa)
pola1DNA polymerase. (1460 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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