13 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SRC	Tyrosine-protein kinase. (544 aa)
	LOC101167949	E3 ubiquitin-protein ligase. (879 aa)
	ENSORLP00000041845	HECT domain-containing protein. (106 aa)
	fndc3a	Fibronectin type III domain containing 3A. (1244 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	LOC101174746	E3 ubiquitin-protein ligase. (877 aa)
	LOC101164480	Tyrosine-protein kinase. (551 aa)
	Nedd4	Uncharacterized protein. (403 aa)
	ubc	Ubiquitin B. (782 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	fndc3b	Fibronectin type III domain containing 3Ba. (1209 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	wwp1	WW domain containing E3 ubiquitin protein ligase 1. (960 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000041845	H2M970_ORYLA	ENSORLP00000041845	ENSORLP00000015051	HECT domain-containing protein.	Ubiquitin-like domain-containing protein.	0.666
ENSORLP00000041845	Nedd4	ENSORLP00000041845	ENSORLP00000032640	HECT domain-containing protein.	Uncharacterized protein.	0.899
ENSORLP00000041845	rps27a	ENSORLP00000041845	ENSORLP00000038189	HECT domain-containing protein.	Ribosomal protein S27a.	0.790
ENSORLP00000041845	uba52	ENSORLP00000041845	ENSORLP00000010731	HECT domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.666
ENSORLP00000041845	ubc	ENSORLP00000041845	ENSORLP00000015065	HECT domain-containing protein.	Ubiquitin B.	0.795
H2M970_ORYLA	ENSORLP00000041845	ENSORLP00000015051	ENSORLP00000041845	Ubiquitin-like domain-containing protein.	HECT domain-containing protein.	0.666
H2M970_ORYLA	LOC101167949	ENSORLP00000015051	ENSORLP00000042687	Ubiquitin-like domain-containing protein.	E3 ubiquitin-protein ligase.	0.749
H2M970_ORYLA	LOC101174746	ENSORLP00000015051	ENSORLP00000036289	Ubiquitin-like domain-containing protein.	E3 ubiquitin-protein ligase.	0.749
H2M970_ORYLA	Nedd4	ENSORLP00000015051	ENSORLP00000032640	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.666
H2M970_ORYLA	rps27a	ENSORLP00000015051	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.992
H2M970_ORYLA	uba52	ENSORLP00000015051	ENSORLP00000010731	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.552
H2M970_ORYLA	ubc	ENSORLP00000015051	ENSORLP00000015065	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.960
H2M970_ORYLA	wwp1	ENSORLP00000015051	ENSORLP00000006490	Ubiquitin-like domain-containing protein.	WW domain containing E3 ubiquitin protein ligase 1.	0.719
LOC101164480	SRC	ENSORLP00000036233	ENSORLP00000008431	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.900
LOC101164480	rps27a	ENSORLP00000036233	ENSORLP00000038189	Tyrosine-protein kinase.	Ribosomal protein S27a.	0.417
LOC101164480	ubc	ENSORLP00000036233	ENSORLP00000015065	Tyrosine-protein kinase.	Ubiquitin B.	0.482
LOC101167949	H2M970_ORYLA	ENSORLP00000042687	ENSORLP00000015051	E3 ubiquitin-protein ligase.	Ubiquitin-like domain-containing protein.	0.749
LOC101167949	LOC101174746	ENSORLP00000042687	ENSORLP00000036289	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.901
LOC101167949	rps27a	ENSORLP00000042687	ENSORLP00000038189	E3 ubiquitin-protein ligase.	Ribosomal protein S27a.	0.919
LOC101167949	uba52	ENSORLP00000042687	ENSORLP00000010731	E3 ubiquitin-protein ligase.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.749