51 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101154761	Signal transducer and activator of transcription. (763 aa)
	LOC101172160	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (594 aa)
	LOC101165394	GRB2 related adaptor protein 2a. (283 aa)
	LOC101168468	Tyrosine-protein kinase. (1123 aa)
	pik3r1	Phosphoinositide-3-kinase, regulatory subunit 1 (alpha). (728 aa)
	gab2	GRB2-associated binding protein 2. (674 aa)
	sh2b3	SH2B adaptor protein 3. (724 aa)
	LOC101163082	Signal transducer and activator of transcription. (786 aa)
	LOC101164953	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (954 aa)
	grb10	Growth factor receptor-bound protein 10b. (577 aa)
	chek1	Checkpoint kinase 1; Belongs to the protein kinase superfamily. (454 aa)
	mmp9	Uncharacterized protein. (690 aa)
	SRC	Tyrosine-protein kinase. (544 aa)
	cbl	Cbl proto-oncogene, E3 ubiquitin protein ligase. (946 aa)
	LOC101166194	GRB2 related adaptor protein b. (261 aa)
	PIK3CA	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1068 aa)
	LOC101168152	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1068 aa)
	fes	Tyrosine-protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family. Fes/fps subfamily. (821 aa)
	LOC101157629	Tyrosine-protein kinase. (1128 aa)
	LOC101155144	Uncharacterized protein. (466 aa)
	YES1	Tyrosine-protein kinase. (550 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	fndc3b	Fibronectin type III domain containing 3Ba. (1209 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (582 aa)
	LOC101160815	GRB2 related adaptor protein a. (217 aa)
	LOC101167902	Tyrosine-protein kinase. (511 aa)
	LOC101166170	Growth factor receptor bound protein 7. (562 aa)
	LOC101163758	Uncharacterized protein. (852 aa)
	grb2	Growth factor receptor-bound protein 2b. (218 aa)
	GRB14	Growth factor receptor bound protein 14. (538 aa)
	H2MSU3_ORYLA	Uncharacterized protein. (420 aa)
	LOC101162321	Tyrosine-protein kinase. (547 aa)
	LOC101158094	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (251 aa)
	LOC101164139	Protein tyrosine phosphatase receptor type Ub. (1397 aa)
	LOC101163728	Uncharacterized protein. (409 aa)
	Kitlg	Kit ligand a. (233 aa)
	kit	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (994 aa)
	LOC101157019	Tyrosine-protein kinase. (537 aa)
	LOC101154954	Zgc:55558. (189 aa)
	kras	GTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity (By similarity). Plays an important role in the regulation of cell proliferation. (189 aa)
	pik3r3	Phosphoinositide-3-kinase, regulatory subunit 3b (gamma). (719 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (875 aa)
	LOC101164480	Tyrosine-protein kinase. (551 aa)
	ptpn11	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (596 aa)
	lck	Tyrosine-protein kinase. (498 aa)
	LOC101162459	Protein tyrosine phosphatase receptor type Ua. (1467 aa)
	fndc3a	Fibronectin type III domain containing 3A. (1244 aa)
	LOC101167011	Tyrosine-protein kinase. (526 aa)
	LOC101168657	Signal transducer and activator of transcription. (785 aa)
	LOC101157849	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (289 aa)
	LOC101158476	Cbl proto-oncogene C, E3 ubiquitin protein ligase. (557 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	H2MSU3_ORYLA	ENSORLP00000034821	ENSORLP00000021836	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.442
CSDE1	Kitlg	ENSORLP00000034821	ENSORLP00000028341	Cold shock domain containing E1, RNA-binding.	Kit ligand a.	0.438
CSDE1	LOC101155144	ENSORLP00000034821	ENSORLP00000013359	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.404
CSDE1	LOC101157019	ENSORLP00000034821	ENSORLP00000029844	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.429
CSDE1	LOC101162321	ENSORLP00000034821	ENSORLP00000022375	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.417
CSDE1	LOC101163728	ENSORLP00000034821	ENSORLP00000026102	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.404
CSDE1	LOC101164480	ENSORLP00000034821	ENSORLP00000036233	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.417
CSDE1	LOC101167011	ENSORLP00000034821	ENSORLP00000041511	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.429
CSDE1	LOC101167902	ENSORLP00000034821	ENSORLP00000015921	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.417
CSDE1	LOC101168152	ENSORLP00000034821	ENSORLP00000011212	Cold shock domain containing E1, RNA-binding.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	0.530
CSDE1	LOC101172160	ENSORLP00000034821	ENSORLP00000000761	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.471
CSDE1	PIK3CA	ENSORLP00000034821	ENSORLP00000011211	Cold shock domain containing E1, RNA-binding.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	0.530
CSDE1	SRC	ENSORLP00000034821	ENSORLP00000008431	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.417
CSDE1	YES1	ENSORLP00000034821	ENSORLP00000014039	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.417
CSDE1	grb2	ENSORLP00000034821	ENSORLP00000019097	Cold shock domain containing E1, RNA-binding.	Growth factor receptor-bound protein 2b.	0.691
CSDE1	lck	ENSORLP00000034821	ENSORLP00000039217	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.417
CSDE1	pik3r1	ENSORLP00000034821	ENSORLP00000003326	Cold shock domain containing E1, RNA-binding.	Phosphoinositide-3-kinase, regulatory subunit 1 (alpha).	0.442
CSDE1	pik3r3	ENSORLP00000034821	ENSORLP00000034046	Cold shock domain containing E1, RNA-binding.	Phosphoinositide-3-kinase, regulatory subunit 3b (gamma).	0.442
CSDE1	ptpn11	ENSORLP00000034821	ENSORLP00000039210	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.471
CSDE1	ptpn6	ENSORLP00000034821	ENSORLP00000015555	Cold shock domain containing E1, RNA-binding.	Protein tyrosine phosphatase non-receptor type 6.	0.471