14 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101162042	Mitogen-activated protein kinase. (361 aa)
	LOC101156149	Uncharacterized protein. (201 aa)
	LOC101175696	Mitogen-activated protein kinase. (354 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	H2MX42_ORYLA	Zgc:171775. (273 aa)
	LOC101159256	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (400 aa)
	MAPKAPK2	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily. (389 aa)
	ralgds	Ral guanine nucleotide dissociation stimulator. (774 aa)
	LOC101160731	Mitogen-activated protein kinase. (360 aa)
	LOC101154954	Zgc:55558. (189 aa)
	LOC101157118	V-ral simian leukemia viral oncogene homolog Ba (ras related). (207 aa)
	kras	GTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity (By similarity). Plays an important role in the regulation of cell proliferation. (189 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (875 aa)
	LOC101167252	V-ral simian leukemia viral oncogene homolog Aa (ras related). (206 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	ralgds	ENSORLP00000034821	ENSORLP00000025580	Cold shock domain containing E1, RNA-binding.	Ral guanine nucleotide dissociation stimulator.	0.733
H2MX42_ORYLA	LOC101159256	ENSORLP00000023483	ENSORLP00000016665	Zgc:171775.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.788
H2MX42_ORYLA	MAPKAPK2	ENSORLP00000023483	ENSORLP00000019719	Zgc:171775.	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily.	0.796
LOC101154954	hras	ENSORLP00000030026	ENSORLP00000014318	Zgc:55558.	HRas proto-oncogene, GTPase a.	0.911
LOC101154954	kras	ENSORLP00000030026	ENSORLP00000031976	Zgc:55558.	GTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity (By similarity). Plays an important role in the regulation of cell proliferation.	0.901
LOC101154954	ralgds	ENSORLP00000030026	ENSORLP00000025580	Zgc:55558.	Ral guanine nucleotide dissociation stimulator.	0.733
LOC101156149	ralgds	ENSORLP00000001677	ENSORLP00000025580	Uncharacterized protein.	Ral guanine nucleotide dissociation stimulator.	0.729
LOC101157118	ralgds	ENSORLP00000030288	ENSORLP00000025580	V-ral simian leukemia viral oncogene homolog Ba (ras related).	Ral guanine nucleotide dissociation stimulator.	0.729
LOC101159256	H2MX42_ORYLA	ENSORLP00000016665	ENSORLP00000023483	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Zgc:171775.	0.788
LOC101159256	LOC101160731	ENSORLP00000016665	ENSORLP00000027025	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase.	0.979
LOC101159256	LOC101162042	ENSORLP00000016665	ENSORLP00000035635	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase.	0.979
LOC101159256	LOC101175696	ENSORLP00000016665	ENSORLP00000011217	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase.	0.977
LOC101159256	MAPKAPK2	ENSORLP00000016665	ENSORLP00000019719	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily.	0.982
LOC101160731	LOC101159256	ENSORLP00000027025	ENSORLP00000016665	Mitogen-activated protein kinase.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.979
LOC101160731	MAPKAPK2	ENSORLP00000027025	ENSORLP00000019719	Mitogen-activated protein kinase.	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily.	0.980
LOC101162042	LOC101159256	ENSORLP00000035635	ENSORLP00000016665	Mitogen-activated protein kinase.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.979
LOC101162042	MAPKAPK2	ENSORLP00000035635	ENSORLP00000019719	Mitogen-activated protein kinase.	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily.	0.980
LOC101167252	ralgds	ENSORLP00000041223	ENSORLP00000025580	V-ral simian leukemia viral oncogene homolog Aa (ras related).	Ral guanine nucleotide dissociation stimulator.	0.729
LOC101175696	LOC101159256	ENSORLP00000011217	ENSORLP00000016665	Mitogen-activated protein kinase.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.977
LOC101175696	MAPKAPK2	ENSORLP00000011217	ENSORLP00000019719	Mitogen-activated protein kinase.	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily.	0.978