11 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101166855	Transforming growth factor, alpha. (254 aa)
	LOC101165892	EGF-like domain-containing protein. (162 aa)
	LOC101166137	EGF-like domain-containing protein. (154 aa)
	LOC101171182	Crystallin, beta B1, like 3; Belongs to the beta/gamma-crystallin family. (209 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	grb2	Growth factor receptor-bound protein 2b. (218 aa)
	LOC101154954	Zgc:55558. (189 aa)
	kras	GTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity (By similarity). Plays an important role in the regulation of cell proliferation. (189 aa)
	egf	Epidermal growth factor. (966 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (875 aa)
	LOC101155207	Betacellulin, epidermal growth factor family member. (183 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	LOC101155207	ENSORLP00000034821	ENSORLP00000037400	Cold shock domain containing E1, RNA-binding.	Betacellulin, epidermal growth factor family member.	0.425
CSDE1	LOC101165892	ENSORLP00000034821	ENSORLP00000002185	Cold shock domain containing E1, RNA-binding.	EGF-like domain-containing protein.	0.426
CSDE1	LOC101166137	ENSORLP00000034821	ENSORLP00000002190	Cold shock domain containing E1, RNA-binding.	EGF-like domain-containing protein.	0.440
CSDE1	LOC101166855	ENSORLP00000034821	ENSORLP00000037014	Cold shock domain containing E1, RNA-binding.	Transforming growth factor, alpha.	0.452
CSDE1	egf	ENSORLP00000034821	ENSORLP00000034297	Cold shock domain containing E1, RNA-binding.	Epidermal growth factor.	0.499
CSDE1	grb2	ENSORLP00000034821	ENSORLP00000019097	Cold shock domain containing E1, RNA-binding.	Growth factor receptor-bound protein 2b.	0.691
LOC101154954	LOC101155207	ENSORLP00000030026	ENSORLP00000037400	Zgc:55558.	Betacellulin, epidermal growth factor family member.	0.425
LOC101154954	LOC101165892	ENSORLP00000030026	ENSORLP00000002185	Zgc:55558.	EGF-like domain-containing protein.	0.426
LOC101154954	LOC101166137	ENSORLP00000030026	ENSORLP00000002190	Zgc:55558.	EGF-like domain-containing protein.	0.440
LOC101154954	LOC101166855	ENSORLP00000030026	ENSORLP00000037014	Zgc:55558.	Transforming growth factor, alpha.	0.452
LOC101154954	egf	ENSORLP00000030026	ENSORLP00000034297	Zgc:55558.	Epidermal growth factor.	0.499
LOC101154954	grb2	ENSORLP00000030026	ENSORLP00000019097	Zgc:55558.	Growth factor receptor-bound protein 2b.	0.691
LOC101154954	hras	ENSORLP00000030026	ENSORLP00000014318	Zgc:55558.	HRas proto-oncogene, GTPase a.	0.911
LOC101154954	kras	ENSORLP00000030026	ENSORLP00000031976	Zgc:55558.	GTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity (By similarity). Plays an important role in the regulation of cell proliferation.	0.901
LOC101155207	CSDE1	ENSORLP00000037400	ENSORLP00000034821	Betacellulin, epidermal growth factor family member.	Cold shock domain containing E1, RNA-binding.	0.425
LOC101155207	LOC101154954	ENSORLP00000037400	ENSORLP00000030026	Betacellulin, epidermal growth factor family member.	Zgc:55558.	0.425
LOC101155207	LOC101165892	ENSORLP00000037400	ENSORLP00000002185	Betacellulin, epidermal growth factor family member.	EGF-like domain-containing protein.	0.936
LOC101155207	LOC101166137	ENSORLP00000037400	ENSORLP00000002190	Betacellulin, epidermal growth factor family member.	EGF-like domain-containing protein.	0.911
LOC101155207	LOC101166855	ENSORLP00000037400	ENSORLP00000037014	Betacellulin, epidermal growth factor family member.	Transforming growth factor, alpha.	0.640
LOC101155207	egf	ENSORLP00000037400	ENSORLP00000034297	Betacellulin, epidermal growth factor family member.	Epidermal growth factor.	0.804