48 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sting1	Transmembrane protein 173. (379 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	adcy9	CREB binding protein b. (2423 aa)
	dhx9	DEAH (Asp-Glu-Ala-His) box helicase 9. (1283 aa)
	mre11	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (694 aa)
	LOC101162558	Im:7160594. (480 aa)
	DDX41	Uncharacterized protein. (614 aa)
	mfsd1	Major facilitator superfamily domain containing 1. (442 aa)
	LOC101163082	Signal transducer and activator of transcription. (786 aa)
	nkiras2	NFKB inhibitor interacting Ras-like 2. (192 aa)
	nfkb2	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100). (956 aa)
	LOC101160197	E1A binding protein p300 a. (2781 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (801 aa)
	ikbkg	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma. (585 aa)
	REL	REL proto-oncogene, NF-kB subunit. (623 aa)
	lrrfip2	Leucine rich repeat (in FLII) interacting protein 2. (758 aa)
	ENSORLP00000043586	Uncharacterized protein. (688 aa)
	LOC101161519	Uncharacterized protein. (1115 aa)
	LOC101168657	Signal transducer and activator of transcription. (785 aa)
	ythdc1	YTH domain containing 1. (695 aa)
	dhx29	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1379 aa)
	tbk1	TANK-binding kinase 1. (665 aa)
	trim32	Tripartite motif containing 32. (622 aa)
	LOC101161277	Melanophilin. (628 aa)
	LOC101163297	Uncharacterized protein. (751 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	LOC101173988	Uncharacterized protein. (698 aa)
	LOC101158892	Interferon regulatory factor 3. (463 aa)
	LOC101168870	E1A binding protein p300 b. (2760 aa)
	nfkb1	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1. (922 aa)
	ctnnb1	Catenin (cadherin-associated protein), beta 1. (783 aa)
	LOC101160355	Deltex 4, E3 ubiquitin ligase a. (772 aa)
	dhx36	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1050 aa)
	ENSORLP00000027635	Uncharacterized protein. (102 aa)
	LOC101163392	CREB binding protein a. (2409 aa)
	YTHDC2	YTH domain containing 2. (1284 aa)
	nfkbia	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b. (316 aa)
	dhx30	DEAH (Asp-Glu-Ala-His) box helicase 30. (1165 aa)
	LOC101162015	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (303 aa)
	CHUK	Component of inhibitor of nuclear factor kappa B kinase complex. (765 aa)
	ubc	Ubiquitin B. (782 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	trim13	Tripartite motif containing 13. (423 aa)
	LOC101158728	V-rel avian reticuloendotheliosis viral oncogene homolog A. (617 aa)
	dhx57	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57. (1423 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	myd88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (288 aa)
	LOC101171857	Component of inhibitor of nuclear factor kappa B kinase complex. (732 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHUK	H2M970_ORYLA	ENSORLP00000016017	ENSORLP00000015051	Component of inhibitor of nuclear factor kappa B kinase complex.	Ubiquitin-like domain-containing protein.	0.573
CHUK	LOC101158728	ENSORLP00000016017	ENSORLP00000013930	Component of inhibitor of nuclear factor kappa B kinase complex.	V-rel avian reticuloendotheliosis viral oncogene homolog A.	0.666
CHUK	LOC101158892	ENSORLP00000016017	ENSORLP00000033054	Component of inhibitor of nuclear factor kappa B kinase complex.	Interferon regulatory factor 3.	0.508
CHUK	LOC101162015	ENSORLP00000016017	ENSORLP00000019864	Component of inhibitor of nuclear factor kappa B kinase complex.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.961
CHUK	LOC101163082	ENSORLP00000016017	ENSORLP00000004950	Component of inhibitor of nuclear factor kappa B kinase complex.	Signal transducer and activator of transcription.	0.440
CHUK	LOC101168657	ENSORLP00000016017	ENSORLP00000042257	Component of inhibitor of nuclear factor kappa B kinase complex.	Signal transducer and activator of transcription.	0.440
CHUK	LOC101171857	ENSORLP00000016017	ENSORLP00000011761	Component of inhibitor of nuclear factor kappa B kinase complex.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.942
CHUK	REL	ENSORLP00000016017	ENSORLP00000001967	Component of inhibitor of nuclear factor kappa B kinase complex.	REL proto-oncogene, NF-kB subunit.	0.666
CHUK	ikbkb	ENSORLP00000016017	ENSORLP00000003065	Component of inhibitor of nuclear factor kappa B kinase complex.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.953
CHUK	ikbkg	ENSORLP00000016017	ENSORLP00000002636	Component of inhibitor of nuclear factor kappa B kinase complex.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.985
CHUK	myd88	ENSORLP00000016017	ENSORLP00000012280	Component of inhibitor of nuclear factor kappa B kinase complex.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.563
CHUK	nfkb1	ENSORLP00000016017	ENSORLP00000031732	Component of inhibitor of nuclear factor kappa B kinase complex.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1.	0.961
CHUK	nfkb2	ENSORLP00000016017	ENSORLP00000003678	Component of inhibitor of nuclear factor kappa B kinase complex.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).	0.964
CHUK	nfkbia	ENSORLP00000016017	ENSORLP00000022136	Component of inhibitor of nuclear factor kappa B kinase complex.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.961
CHUK	rps27a	ENSORLP00000016017	ENSORLP00000038189	Component of inhibitor of nuclear factor kappa B kinase complex.	Ribosomal protein S27a.	0.625
CHUK	sting1	ENSORLP00000016017	ENSORLP00000012242	Component of inhibitor of nuclear factor kappa B kinase complex.	Transmembrane protein 173.	0.829
CHUK	uba52	ENSORLP00000016017	ENSORLP00000010731	Component of inhibitor of nuclear factor kappa B kinase complex.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.573
CHUK	ubc	ENSORLP00000016017	ENSORLP00000015065	Component of inhibitor of nuclear factor kappa B kinase complex.	Ubiquitin B.	0.565
DDX41	LOC101158892	ENSORLP00000008395	ENSORLP00000033054	Uncharacterized protein.	Interferon regulatory factor 3.	0.556
DDX41	YTHDC2	ENSORLP00000008395	ENSORLP00000023815	Uncharacterized protein.	YTH domain containing 2.	0.534