17 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (569 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (801 aa)
	LOC101170271	Nerve growth factor receptor a (TNFR superfamily, member 16). (389 aa)
	LOC101164147	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family. (198 aa)
	ripk2	Receptor-interacting serine-threonine kinase 2. (590 aa)
	LOC101157368	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family. (291 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	myd88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (288 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	ubc	Ubiquitin B. (782 aa)
	LOC101162015	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (303 aa)
	nfkbia	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b. (316 aa)
	prkci	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (554 aa)
	sqstm1	Sequestosome 1. (436 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	LOC101166088	Nerve growth factor receptor b. (434 aa)
	LOC101166698	Protein kinase domain-containing protein. (721 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2M970_ORYLA	LOC101162015	ENSORLP00000015051	ENSORLP00000019864	Ubiquitin-like domain-containing protein.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.775
H2M970_ORYLA	LOC101166698	ENSORLP00000015051	ENSORLP00000040412	Ubiquitin-like domain-containing protein.	Protein kinase domain-containing protein.	0.583
H2M970_ORYLA	ikbkb	ENSORLP00000015051	ENSORLP00000003065	Ubiquitin-like domain-containing protein.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.614
H2M970_ORYLA	myd88	ENSORLP00000015051	ENSORLP00000012280	Ubiquitin-like domain-containing protein.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.516
H2M970_ORYLA	nfkbia	ENSORLP00000015051	ENSORLP00000022136	Ubiquitin-like domain-containing protein.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.775
H2M970_ORYLA	prkci	ENSORLP00000015051	ENSORLP00000022487	Ubiquitin-like domain-containing protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.513
H2M970_ORYLA	rps27a	ENSORLP00000015051	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.992
H2M970_ORYLA	sqstm1	ENSORLP00000015051	ENSORLP00000025483	Ubiquitin-like domain-containing protein.	Sequestosome 1.	0.719
H2M970_ORYLA	traf6	ENSORLP00000015051	ENSORLP00000001290	Ubiquitin-like domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.926
H2M970_ORYLA	uba52	ENSORLP00000015051	ENSORLP00000010731	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.552
H2M970_ORYLA	ubc	ENSORLP00000015051	ENSORLP00000015065	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.960
LOC101157368	LOC101164147	ENSORLP00000010673	ENSORLP00000008065	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.	0.902
LOC101157368	LOC101166088	ENSORLP00000010673	ENSORLP00000038605	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Nerve growth factor receptor b.	0.970
LOC101157368	LOC101166698	ENSORLP00000010673	ENSORLP00000040412	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Protein kinase domain-containing protein.	0.439
LOC101157368	LOC101170271	ENSORLP00000010673	ENSORLP00000003150	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.965
LOC101157368	myd88	ENSORLP00000010673	ENSORLP00000012280	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.454
LOC101157368	ripk2	ENSORLP00000010673	ENSORLP00000010554	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Receptor-interacting serine-threonine kinase 2.	0.449
LOC101157368	traf6	ENSORLP00000010673	ENSORLP00000001290	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.431
LOC101162015	H2M970_ORYLA	ENSORLP00000019864	ENSORLP00000015051	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Ubiquitin-like domain-containing protein.	0.775
LOC101162015	LOC101166698	ENSORLP00000019864	ENSORLP00000040412	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Protein kinase domain-containing protein.	0.563