STRINGSTRING
LOC101154844 LOC101154844 traf6 traf6 LOC101170271 LOC101170271 NCSTN NCSTN LOC101164147 LOC101164147 psenen psenen LOC101157368 LOC101157368 ubc ubc LOC101159650 LOC101159650 psen2 psen2 sqstm1 sqstm1 rps27a rps27a LOC101166088 LOC101166088
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC101154844Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (410 aa)
traf6TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (569 aa)
LOC101170271Nerve growth factor receptor a (TNFR superfamily, member 16). (389 aa)
NCSTNNicastrin. (677 aa)
LOC101164147Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family. (198 aa)
psenenPresenilin enhancer, gamma-secretase subunit. (101 aa)
LOC101157368Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family. (291 aa)
ubcUbiquitin B. (782 aa)
LOC101159650APH1B gamma secretase subunit. (258 aa)
psen2Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (421 aa)
sqstm1Sequestosome 1. (436 aa)
rps27aRibosomal protein S27a. (195 aa)
LOC101166088Nerve growth factor receptor b. (434 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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