STRINGSTRING
rps27a rps27a LOC101166088 LOC101166088 LOC101166698 LOC101166698 sqstm1 sqstm1 prkci prkci ubc ubc myd88 myd88 LOC101157368 LOC101157368 ripk2 ripk2 LOC101164147 LOC101164147 LOC101170271 LOC101170271 ikbkb ikbkb traf6 traf6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rps27aRibosomal protein S27a. (195 aa)
LOC101166088Nerve growth factor receptor b. (434 aa)
LOC101166698Protein kinase domain-containing protein. (721 aa)
sqstm1Sequestosome 1. (436 aa)
prkciProtein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (554 aa)
ubcUbiquitin B. (782 aa)
myd88Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (288 aa)
LOC101157368Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family. (291 aa)
ripk2Receptor-interacting serine-threonine kinase 2. (590 aa)
LOC101164147Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family. (198 aa)
LOC101170271Nerve growth factor receptor a (TNFR superfamily, member 16). (389 aa)
ikbkbInhibitor of nuclear factor kappa B kinase subunit beta. (801 aa)
traf6TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (569 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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